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Xenopus ANatomical entity (XAN): visual system

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   anatomical group [XAO:0003001] <2>(418|530) (420|307|132)
+ + 2:   nervous system [XAO:0000177] <11>(134|200) (140|112|51)
+ + 2:   anatomical system [XAO:0003002] <19>(285|379) (290|203|91)
+ 1:   sensory system [XAO:0003194] <5>(38|52) (44|25|10)
0:   visual system [XAO:0003198] <5>(26|35) (29|15|7)
- 1:   eye [XAO:0000179] <14>(24|29) (26|13|6)
- 1:   optic vesicle [XAO:0000228] <4>(5|7) (6|2|1)
- 1:   Stirnorgan [XAO:0001012](0|0) (0|0|0)
- 1:   eye primordium [XAO:0000227](3|2) (3|1|0)
- 1:   pineal gland [XAO:0000160](1|2) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Nop domain0Direct
Hedgehog/DD-peptidase0Direct
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
Synuclein0Direct
Guanido kinase N-terminal domain0Direct
SMAD MH1 domain0.0001342Direct
PYP-like sensor domain (PAS domain)0.0001583Direct
Orange domain-like0.0002085Direct
Zn-binding ribosomal proteins0.0005873Direct
gamma-Crystallin-like0.01437Inherited
DNA-binding domain0.1309Inherited
RNA-binding domain, RBD0.1347Inherited
Ras GEF0.1409Inherited
HLH, helix-loop-helix DNA-binding domain0.2909Inherited
Fibronectin type III0.4178Inherited
Cytokine0.466Inherited
Galactose-binding domain-like0.4691Inherited
Voltage-gated potassium channels0.7073Inherited
Frizzled cysteine-rich domain0.8156Inherited
Intermediate filament protein, coiled coil region0.8429Inherited
HMG-box0.8916Inherited
"Winged helix" DNA-binding domain0.9095Inherited
POZ domain0.9812Inherited
Homeodomain-like1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Synuclein0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Noggin0Direct
Guanido kinase catalytic domain0Direct
Nop domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Guanido kinase N-terminal domain0Direct
Arrestin/Vps26-like0Direct
PAS domain of steroid receptor coactivator 1A, NCo-A10Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
SMAD domain0.00003276Direct
SMAD MH1 domain0.0001397Direct
Hairy Orange domain0.0002258Direct
P4 origin-binding domain-like0.0005923Direct
Extracellular domain of cell surface receptors0.0005923Direct
POU-specific domain0.01079Inherited
Crystallins/Ca-binding development proteins0.01493Inherited
Glutathione peroxidase-like0.02679Inherited
Arginine methyltransferase0.07412Inherited
Canonical RBD0.07768Inherited
HLH, helix-loop-helix DNA-binding domain0.2424Inherited
Fibronectin type III0.3665Inherited
Fibroblast growth factors (FGF)0.4484Inherited
I set domains0.4962Inherited
Voltage-gated potassium channels0.5137Inherited
Higher-molecular-weight phosphotyrosine protein phosphatases0.6277Inherited
Tetramerization domain of potassium channels0.7169Inherited
Frizzled cysteine-rich domain0.7686Inherited
Intermediate filament protein, coiled coil region0.7993Inherited
Forkhead DNA-binding domain0.8018Inherited
HMG-box0.8462Inherited
Homeodomain1Inherited
Sema domain1Inherited
Rhodopsin-like1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Guanido kinase N-terminal domain0Direct
PriA/YqbF domain0Direct
Synuclein0Direct
GINS helical bundle-like0Direct
Hedgehog/DD-peptidase0Direct
Nop domain0Direct
14-3-3 protein0Direct
SMAD MH1 domain0.00009962Direct
PYP-like sensor domain (PAS domain)0.0001178Direct
Orange domain-like0.0001555Direct
Zn-binding ribosomal proteins0.0004442Direct
Phosphoglycerate mutase-like0.0009625Direct
gamma-Crystallin-like0.01136Inherited
DNA-binding domain0.1131Inherited
RNA-binding domain, RBD0.1166Inherited
Ras GEF0.1222Inherited
HLH, helix-loop-helix DNA-binding domain0.2627Inherited
Fibronectin type III0.3859Inherited
F-box domain0.4018Inherited
Cytokine0.4323Inherited
Galactose-binding domain-like0.4354Inherited
Voltage-gated potassium channels0.6728Inherited
Frizzled cysteine-rich domain0.7846Inherited
Immunoglobulin0.8004Inherited
Intermediate filament protein, coiled coil region0.8126Inherited
HMG-box0.8629Inherited
"Winged helix" DNA-binding domain0.8807Inherited
POZ domain0.9558Inherited
Homeodomain-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0001555Direct
    47459,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0004102Direct
    55785,55785
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0006067Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.003965Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.02328Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.1049Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.4631Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.5266Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.6858Inherited
    57850,49599
  • 57850 - RING/U-box
  • 49599 - TRAF domain-like
  • 0.8783Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00003828Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0001555Direct
    48726,49265,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.02222Inherited
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.02907Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.6858Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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