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Xenopus ANatomical entity (XAN): neural tube

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical group [XAO:0003001] <2>(418|530) (420|307|132)
+ + + 3:   anatomical system [XAO:0003002] <19>(285|379) (290|203|91)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   nervous system [XAO:0000177] <11>(134|200) (140|112|51)
+ + 2:   embryo [XAO:0000113] <8>(133|185) (135|87|37)
+ + 2:   whole organism [XAO:0003004] <12>(463|595) (466|331|144)
+ 1:   embryonic structure [XAO:0003042] <58>(42|54) (44|27|13)
+ 1:   central nervous system [XAO:0000215] <7>(129|190) (132|107|47)
0:   neural tube [XAO:0003204] <7>(7|13) (8|2|2)
- 1:   neurenteric canal [XAO:0005245] <1>(1|1) (1|0|0)
- 1:   anterior neural tube [XAO:0000307](1|2) (1|0|0)
- 1:   chordoneural hinge [XAO:0000108](4|5) (4|1|1)
- 1:   dorsolateral neural tube [XAO:0004617](0|0) (0|0|0)
- 1:   posterior neural tube [XAO:0000250](1|2) (1|1|0)
- 1:   sulcus limitans of neural tube [XAO:0005070](0|0) (0|0|0)
- 1:   ventrolateral neural tube [XAO:0004616](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.000000000007358Direct
Cytokine0.00000003532Direct
"Winged helix" DNA-binding domain0.000002337Direct
Orange domain-like0.00002308Direct
Cystine-knot cytokines0.0001509Direct
Frizzled cysteine-rich domain0.0001917Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Noggin0Direct
Homeodomain0Direct
HLH, helix-loop-helix DNA-binding domain0.00000000003631Direct
Fibroblast growth factors (FGF)0.00000001246Direct
Hairy Orange domain0.00002636Direct
P4 origin-binding domain-like0.00002764Direct
VWC domain0.0001045Direct
Paired domain0.0001065Direct
Forkhead DNA-binding domain0.0001928Direct
Frizzled cysteine-rich domain0.000251Direct
POU-specific domain0.0006914Direct
Cell cycle control phosphatase, catalytic domain0.0009981Direct
Extracellular domain of cell surface receptors0.0009981Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.000000000005136Direct
Cytokine0.00000002491Direct
"Winged helix" DNA-binding domain0.000001675Direct
Orange domain-like0.00001681Direct
Cystine-knot cytokines0.0001122Direct
Frizzled cysteine-rich domain0.0001429Direct
FnI-like domain0.0007989Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.00001681Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.01027Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.0001717Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02155Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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