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Xenopus ANatomical entity (XAN): retinal neural layer

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   anatomical group [XAO:0003001] <2>(419|531) (421|308|133)
+ + + + + 5:   anatomical region [XAO:0003186] <51>(374|484) (375|284|123)
+ + + + + 5:   anatomical system [XAO:0003002] <19>(286|380) (291|204|92)
+ + + + 4:   sensory system [XAO:0003194] <5>(39|52) (43|24|10)
+ + + + 4:   organism subdivision [XAO:0003013] <11>(379|498) (382|291|126)
+ + + + 4:   compound organ [XAO:0003041] <8>(336|444) (337|275|124)
+ + + + 4:   head region [XAO:0000040] <4>(180|246) (183|139|58)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   nervous system [XAO:0000177] <11>(135|201) (141|113|52)
+ + + 3:   central nervous system [XAO:0000215] <7>(130|191) (133|108|48)
+ + + 3:   cavitated compound organ [XAO:0003165] <21>(288|393) (291|247|113)
+ + + 3:   head [XAO:0003024] <22>(180|245) (183|139|58)
+ + + 3:   visual system [XAO:0003198] <5>(26|35) (29|14|7)
+ + + 3:   whole organism [XAO:0003004] <12>(464|596) (467|333|144)
+ + + 3:   anatomical structure [XAO:0003000] <11>(576|729) (576|397|162)
+ + 2:   eye [XAO:0000179] <14>(24|29) (26|12|6)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(438|563) (440|323|141)
+ 1:   multi-tissue structure [XAO:0003037] <131>(48|62) (51|30|14)
+ 1:   retina [XAO:0000009] <6>(10|15) (12|7|2)
0:   retinal neural layer [XAO:0003216] <12>(6|11) (7|4|2)
- 1:   photoreceptor layer [XAO:0003215] <1>(0|2) (1|0|0)
- 1:   retinal ganglion cell layer [XAO:0003223] <1>(5|8) (5|3|1)
- 1:   amacrine cell [XAO:0004099](0|0) (0|0|0)
- 1:   bipolar neuron [XAO:0004098](0|0) (0|0|0)
- 1:   horizontal cell [XAO:0004097](0|0) (0|0|0)
- 1:   inner limiting membrane [XAO:0003222](0|0) (0|0|0)
- 1:   optic fiber layer [XAO:0003220](0|0) (0|0|0)
- 1:   outer limiting membrane [XAO:0003224](0|0) (0|0|0)
- 1:   retinal inner nuclear layer [XAO:0003221](4|5) (5|3|1)
- 1:   retinal inner plexiform layer [XAO:0003225](3|3) (4|0|0)
- 1:   retinal outer nuclear layer [XAO:0003219](1|1) (1|0|0)
- 1:   retinal outer plexiform layer [XAO:0003218](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Voltage-gated potassium channels0.0004308Direct
Fibronectin type III0.0007415Direct
Intermediate filament protein, coiled coil region0.00223Inherited
Ras GEF0.0328Inherited
HLH, helix-loop-helix DNA-binding domain0.4884Inherited
Homeodomain-like0.5319Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Arrestin/Vps26-like0Direct
Fibronectin type III0.0006107Direct
Intermediate filament protein, coiled coil region0.001824Inherited
Voltage-gated potassium channels0.003082Inherited
Tetramerization domain of potassium channels0.006414Inherited
Rhodopsin-like0.008266Inherited
Higher-molecular-weight phosphotyrosine protein phosphatases0.01276Inherited
POU-specific domain0.01276Inherited
I set domains0.03726Inherited
HLH, helix-loop-helix DNA-binding domain0.4645Inherited
Homeodomain0.6128Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Voltage-gated potassium channels0.0003242Direct
Fibronectin type III0.0005617Direct
Intermediate filament protein, coiled coil region0.001714Inherited
Ras GEF0.02646Inherited
Immunoglobulin0.2351Inherited
HLH, helix-loop-helix DNA-binding domain0.4546Inherited
Homeodomain-like0.4972Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0006476Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.000989Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0026Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.006509Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.00002634Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.003028Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)