SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus DEvelopment stage (XDE): premetamorphosis stage

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Xenopus developmental stage [XAO:1000000] <6>
+ + 2:   post-embryonic stage [XAO:1000095] <3>(124|169) (125|89|39)
+ 1:   tadpole stage [XAO:1000008] <2>(117|161) (118|85|36)
0:   premetamorphosis stage [XAO:1000089] <10>(6|7) (6|3|1)
- 1:   NF stage 45 [XAO:1000057](2|2) (2|3|1)
- 1:   NF stage 46 [XAO:1000058](2|1) (2|0|0)
- 1:   NF stage 47 [XAO:1000059](1|1) (1|0|0)
- 1:   NF stage 48 [XAO:1000060](1|2) (1|0|0)
- 1:   NF stage 49 [XAO:1000061](0|0) (0|0|0)
- 1:   NF stage 50 [XAO:1000062](0|0) (0|0|0)
- 1:   NF stage 51 [XAO:1000063](0|0) (0|0|0)
- 1:   NF stage 52 [XAO:1000064](0|0) (0|0|0)
- 1:   NF stage 53 [XAO:1000065](0|0) (0|0|0)
- 1:   NF stage 54 [XAO:1000066](2|2) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
TSP-1 type 1 repeat0.0000000000002724Direct
Metalloproteases ("zincins"), catalytic domain0.00000001218Direct
Homeodomain-like0.000263Direct
p53-like transcription factors0.01468Inherited
Complement control module/SCR domain0.02249Inherited
Serpins0.07809Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Reprolysin-like0.000000000000001112Direct
TSP-1 type 1 repeat0.0000000000001333Direct
Paired domain0.00006516Direct
T-box0.0007579Direct
Homeodomain0.005359Inherited
Complement control module/SCR domain0.01667Inherited
Serpins0.06179Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
TSP-1 type 1 repeat0.0000000000001791Direct
Metalloproteases ("zincins"), catalytic domain0.000000008017Direct
Homeodomain-like0.0001769Direct
p53-like transcription factors0.01065Inherited
Complement control module/SCR domain0.01662Inherited
Serpins0.06202Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55486,82895
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.00000000000009165Direct
    48403,48403
  • 48403 - Ankyrin repeat
  • 48403 - Ankyrin repeat
  • 0.004382Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    82895,82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.000000001503Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)