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Xenopus ANatomical entity (XAN): otic vesicle

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   nervous system [XAO:0000177] <11>(134|200) (140|113|51)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   sensory system [XAO:0003194] <5>(38|51) (43|25|10)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   tissue [XAO:0003040] <184>(180|248) (186|128|57)
+ 1:   vestibuloauditory system [XAO:0003195] <4>(17|21) (19|8|5)
0:   otic vesicle [XAO:0000006](10|14) (12|4|3)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PLP-binding barrel0Direct
Alanine racemase C-terminal domain-like0Direct
Homeodomain-like0.00000000000117Direct
Frizzled cysteine-rich domain0.000000000287Direct
HLH, helix-loop-helix DNA-binding domain0.00000006672Direct
HMG-box0.00005844Direct
SMAD MH1 domain0.0005396Direct
BRK domain-like0.0005644Direct
Cytokine0.0006928Direct
Growth factor receptor domain0.0008952Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Alanine racemase-like, N-terminal domain0Direct
Eukaryotic ODC-like0Direct
Homeodomain0.00000000001554Direct
Frizzled cysteine-rich domain0.0000000005394Direct
HLH, helix-loop-helix DNA-binding domain0.0000001653Direct
ets domain0.00005456Direct
HMG-box0.0000836Direct
Tandem AAA-ATPase domain0.00008456Direct
L domain0.00009368Direct
SMAD domain0.0001058Direct
Fibroblast growth factors (FGF)0.0003688Direct
SMAD MH1 domain0.0005391Direct
BRK domain-like0.0005419Direct
Hypoxia-inducible factor Hif2a, C-terminal domain0.0006451Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PLP-binding barrel0Direct
Alanine racemase C-terminal domain-like0Direct
Homeodomain-like0.000000000000807Direct
Frizzled cysteine-rich domain0.0000000001988Direct
HLH, helix-loop-helix DNA-binding domain0.00000004661Direct
HMG-box0.00004265Direct
SMAD MH1 domain0.0004045Direct
BRK domain-like0.000423Direct
Cytokine0.0005203Direct
Growth factor receptor domain0.0006749Direct
Cystine-knot cytokines0.000782Direct
"Winged helix" DNA-binding domain0.0007981Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.00006947Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00006947Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.000603Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00008132Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.000423Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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