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Xenopus ANatomical entity (XAN): forebrain

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + + 4:   anatomical region [XAO:0003186] <43>(373|484) (375|285|122)
+ + + 3:   organism subdivision [XAO:0003013] <11>(378|498) (382|292|125)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   compound organ [XAO:0003041] <8>(334|444) (336|276|123)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   nervous system [XAO:0000177] <11>(133|200) (140|113|51)
+ + + 3:   head region [XAO:0000040] <4>(178|247) (182|140|57)
+ + 2:   head [XAO:0003024] <22>(178|246) (182|140|57)
+ + 2:   cavitated compound organ [XAO:0003165] <23>(286|393) (290|248|112)
+ + 2:   central nervous system [XAO:0000215] <7>(128|190) (132|108|47)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   brain [XAO:0000010] <15>(78|120) (79|65|28)
+ 1:   multi-tissue structure [XAO:0003037] <130>(48|62) (51|32|14)
0:   forebrain [XAO:0000011] <5>(12|12) (12|3|4)
- 1:   diencephalon [XAO:0000013] <11>(3|3) (3|2|2)
- 1:   telencephalon [XAO:0000012] <9>(3|3) (3|1|0)
- 1:   hypophysis [XAO:0000017] <4>(0|0) (0|0|0)
- 1:   prosomere [XAO:0004598] <3>(2|2) (2|1|0)
- 1:   lateral forebrain bundle [XAO:0004559](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Alanine racemase C-terminal domain-like0Direct
PLP-binding barrel0Direct
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.000003109Direct
Glucocorticoid receptor-like (DNA-binding domain)0.00004448Direct
Frizzled cysteine-rich domain0.0001573Direct
Cytokine0.0002755Direct
HMG-box0.0002913Direct
BRK domain-like0.0005046Direct
Family A G protein-coupled receptor-like0.1335Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Eukaryotic ODC-like0Direct
Alanine racemase-like, N-terminal domain0Direct
Noggin0Direct
Homeodomain5.633e-16Direct
Tandem AAA-ATPase domain0.000002553Direct
HLH, helix-loop-helix DNA-binding domain0.00001074Direct
Paired domain0.0001061Direct
Frizzled cysteine-rich domain0.0002334Direct
HMG-box0.0005273Direct
BRK domain-like0.0005428Direct
LIM domain0.01148Inherited
Rhodopsin-like0.2314Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
GINS helical bundle-like0Direct
Alanine racemase C-terminal domain-like0Direct
PLP-binding barrel0Direct
PriA/YqbF domain0Direct
HLH, helix-loop-helix DNA-binding domain0.000002209Direct
Glucocorticoid receptor-like (DNA-binding domain)0.00003236Direct
Frizzled cysteine-rich domain0.000116Direct
Cytokine0.0002048Direct
HMG-box0.0002167Direct
BRK domain-like0.0003778Direct
Family A G protein-coupled receptor-like0.1154Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0004145Direct
    57716,48508
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 48508 - Nuclear receptor ligand-binding domain
  • 0.09351Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.0000453Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0003539Direct
    49899,57196,57196
  • 49899 - Concanavalin A-like lectins/glucanases
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.001861Inherited
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.009039Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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