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Xenopus ANatomical entity (XAN): diencephalon

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + + + 5:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + + + 5:   anatomical region [XAO:0003186] <43>(373|484) (375|285|122)
+ + + + 4:   compound organ [XAO:0003041] <8>(334|444) (336|276|123)
+ + + + 4:   organism subdivision [XAO:0003013] <11>(378|498) (382|292|125)
+ + + + 4:   head region [XAO:0000040] <4>(178|247) (182|140|57)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   nervous system [XAO:0000177] <11>(133|200) (140|113|51)
+ + + 3:   head [XAO:0003024] <22>(178|246) (182|140|57)
+ + + 3:   cavitated compound organ [XAO:0003165] <23>(286|393) (290|248|112)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   central nervous system [XAO:0000215] <7>(128|190) (132|108|47)
+ + 2:   brain [XAO:0000010] <15>(78|120) (79|65|28)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   forebrain [XAO:0000011] <5>(12|12) (12|3|4)
+ 1:   multi-tissue structure [XAO:0003037] <130>(48|62) (51|32|14)
0:   diencephalon [XAO:0000013] <11>(3|3) (3|2|2)
- 1:   thalamus [XAO:0004306] <6>(2|2) (2|1|0)
- 1:   hypothalamus [XAO:0004070] <5>(3|2) (3|2|0)
- 1:   pretectum [XAO:0004303] <1>(2|2) (2|1|0)
- 1:   eminentia thalami [XAO:0004301](0|0) (0|0|0)
- 1:   infundibulum [XAO:0004210](1|1) (1|0|0)
- 1:   optic chiasm [XAO:0004071](0|0) (0|0|0)
- 1:   optic stalk [XAO:0000475](1|1) (1|0|0)
- 1:   optic tract [XAO:0004101](0|0) (1|0|0)
- 1:   prosomere 4 [XAO:0004599](0|1) (0|1|0)
- 1:   third ventricle [XAO:0004608](0|0) (0|0|0)
- 1:   zona limitans intrathalamica [XAO:0004305](2|1) (2|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.000000005855Direct
Family A G protein-coupled receptor-like0.00002854Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0001914Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.00000001076Direct
Rhodopsin-like0.0002782Direct
LIM domain0.002892Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.00000000407Direct
Family A G protein-coupled receptor-like0.00002066Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0001416Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.002626Inherited
    57716,48508
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 48508 - Nuclear receptor ligand-binding domain
  • 0.0101Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.000008182Direct
    49899,57196,57196
  • 49899 - Concanavalin A-like lectins/glucanases
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0004411Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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