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Xenopus ANatomical entity (XAN): midbrain

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + + 4:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + + + 4:   anatomical region [XAO:0003186] <51>(370|484) (374|284|123)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + 3:   compound organ [XAO:0003041] <8>(332|444) (336|275|125)
+ + + 3:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + 3:   organism subdivision [XAO:0003013] <11>(375|498) (381|292|126)
+ + + 3:   head region [XAO:0000040] <4>(178|245) (183|137|58)
+ + + 3:   nervous system [XAO:0000177] <11>(134|201) (141|114|53)
+ + 2:   head [XAO:0003024] <22>(178|244) (183|137|58)
+ + 2:   central nervous system [XAO:0000215] <7>(129|191) (135|108|49)
+ + 2:   cavitated compound organ [XAO:0003165] <21>(287|395) (292|247|114)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ 1:   multi-tissue structure [XAO:0003037] <131>(49|63) (53|31|15)
+ 1:   brain [XAO:0000010] <14>(79|120) (80|65|28)
0:   midbrain [XAO:0000014] <9>(9|10) (9|3|0)
- 1:   midbrain tegmentum [XAO:0004271] <7>(1|1) (1|0|0)
- 1:   optic tectum [XAO:0003226] <5>(1|0) (1|1|0)
- 1:   mesencephalic artery [XAO:0004173](0|0) (0|0|0)
- 1:   mesencephalic vein [XAO:0004174](0|0) (0|0|0)
- 1:   oculomotor motornucleus [XAO:0004389](0|0) (0|0|0)
- 1:   pineal gland [XAO:0000160](1|2) (1|0|0)
- 1:   posterior commissure [XAO:0004579](0|0) (0|0|0)
- 1:   torus semicircularis [XAO:0004590](0|0) (0|0|0)
- 1:   trochlear motornucleus [XAO:0004391](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
Synuclein0Direct
PriA/YqbF domain0Direct
HLH, helix-loop-helix DNA-binding domain0.0000001342Direct
Frizzled cysteine-rich domain0.00006343Direct
Glucocorticoid receptor-like (DNA-binding domain)0.00008731Direct
BRK domain-like0.0003158Direct
Orange domain-like0.0009176Direct
Intermediate filament protein, coiled coil region0.2686Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Homeodomain0.000000000000001113Direct
HLH, helix-loop-helix DNA-binding domain0.0000004373Direct
Tandem AAA-ATPase domain0.00002919Direct
Frizzled cysteine-rich domain0.00008728Direct
Classic zinc finger, C2H20.0003155Direct
BRK domain-like0.0003258Direct
Paired domain0.0009965Direct
Hairy Orange domain0.0009965Direct
Intermediate filament protein, coiled coil region0.2931Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Synuclein0Direct
Homeodomain-like0Direct
PriA/YqbF domain0Direct
HLH, helix-loop-helix DNA-binding domain0.00000009458Direct
Frizzled cysteine-rich domain0.00004656Direct
Glucocorticoid receptor-like (DNA-binding domain)0.00006431Direct
BRK domain-like0.0002362Direct
Orange domain-like0.0006953Direct
Intermediate filament protein, coiled coil region0.2413Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0006953Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.002282Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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