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Xenopus ANatomical entity (XAN): midbrain

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + + 4:   anatomical region [XAO:0003186] <43>(373|484) (375|285|122)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   compound organ [XAO:0003041] <8>(334|444) (337|276|123)
+ + + 3:   nervous system [XAO:0000177] <11>(134|200) (140|113|51)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   head region [XAO:0000040] <4>(178|247) (182|140|57)
+ + + 3:   organism subdivision [XAO:0003013] <11>(378|498) (383|292|125)
+ + 2:   head [XAO:0003024] <22>(178|246) (182|140|57)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + 2:   cavitated compound organ [XAO:0003165] <23>(287|393) (291|248|112)
+ + 2:   central nervous system [XAO:0000215] <7>(129|190) (132|108|47)
+ 1:   multi-tissue structure [XAO:0003037] <130>(48|62) (51|32|14)
+ 1:   brain [XAO:0000010] <15>(78|119) (80|65|28)
0:   midbrain [XAO:0000014] <9>(8|10) (8|4|0)
- 1:   midbrain tegmentum [XAO:0004271] <7>(1|1) (1|0|0)
- 1:   optic tectum [XAO:0003226] <5>(1|0) (1|1|0)
- 1:   mesencephalic artery [XAO:0004173](0|0) (0|0|0)
- 1:   mesencephalic vein [XAO:0004174](0|0) (0|0|0)
- 1:   oculomotor motornucleus [XAO:0004389](0|0) (0|0|0)
- 1:   pineal gland [XAO:0000160](1|2) (1|0|0)
- 1:   posterior commissure [XAO:0004579](0|0) (0|0|0)
- 1:   torus semicircularis [XAO:0004590](0|0) (0|0|0)
- 1:   trochlear motornucleus [XAO:0004391](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.0000003085Direct
Frizzled cysteine-rich domain0.00005832Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0001715Direct
BRK domain-like0.0003044Direct
Orange domain-like0.0008805Direct
Intermediate filament protein, coiled coil region0.26Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Homeodomain0.000000000000001126Direct
HLH, helix-loop-helix DNA-binding domain0.0000009328Direct
Tandem AAA-ATPase domain0.00002206Direct
Frizzled cysteine-rich domain0.00007964Direct
Classic zinc finger, C2H20.0002222Direct
BRK domain-like0.0003118Direct
Hairy Orange domain0.0009488Direct
Paired domain0.0009488Direct
Intermediate filament protein, coiled coil region0.2819Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
Synuclein0Direct
HLH, helix-loop-helix DNA-binding domain0.0000002168Direct
Frizzled cysteine-rich domain0.00004256Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0001266Direct
BRK domain-like0.0002265Direct
Orange domain-like0.0006633Direct
Intermediate filament protein, coiled coil region0.2328Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0006633Direct
    50729,50729
  • 50729 - PH domain-like
  • 50729 - PH domain-like
  • 0.0009325Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.002097Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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