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Xenopus ANatomical entity (XAN): spinal cord

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + + 4:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + 2:   compound organ [XAO:0003041] <8>(334|444) (336|276|123)
+ + 2:   nervous system [XAO:0000177] <11>(133|200) (140|113|51)
+ 1:   central nervous system [XAO:0000215] <7>(128|190) (132|108|47)
+ 1:   cavitated compound organ [XAO:0003165] <23>(286|393) (290|248|112)
0:   spinal cord [XAO:0000020] <10>(18|26) (20|19|9)
- 1:   astrocyte [XAO:0005131] <1>(0|0) (0|0|0)
- 1:   central canal [XAO:0004543](0|0) (0|0|0)
- 1:   dorsal funiculus [XAO:0004580](0|0) (0|0|0)
- 1:   floor plate [XAO:0000306](2|3) (3|1|0)
- 1:   lateral funiculus [XAO:0004560](0|0) (0|0|0)
- 1:   oligodendrocyte [XAO:0005133](0|0) (0|0|0)
- 1:   roof plate [XAO:0000022](0|0) (0|0|0)
- 1:   solitary tract [XAO:0004586](0|0) (0|0|0)
- 1:   spinal neuron [XAO:0005018](3|3) (3|1|0)
- 1:   ventral funiculus [XAO:0004535](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nop domain0Direct
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.000000000000008645Direct
"Winged helix" DNA-binding domain0.000008743Direct
14-3-3 protein0.0000223Direct
Growth factor receptor domain0.00002594Direct
Orange domain-like0.00003491Direct
Kazal-type serine protease inhibitors0.00005535Direct
PYP-like sensor domain (PAS domain)0.00006581Direct
EGF/Laminin0.0002209Direct
Voltage-gated potassium channels0.0002528Direct
HMG-box0.0002594Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0003717Direct
lambda repressor-like DNA-binding domains0.0004327Direct
RNA-binding domain, RBD0.0004357Direct
Intermediate filament protein, coiled coil region0.007427Inherited
Tubulin C-terminal domain-like0.1661Inherited
Tubulin nucleotide-binding domain-like0.1927Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cyclin A/CDK2-associated p19, Skp20Direct
Nop domain0Direct
Homeodomain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
PAS domain of steroid receptor coactivator 1A, NCo-A10Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000007252Direct
Growth factor receptor domain0.0000004476Direct
Forkhead DNA-binding domain0.000004626Direct
14-3-3 protein0.00002554Direct
L domain0.00002554Direct
Hairy Orange domain0.00004212Direct
I set domains0.0000779Direct
POU-specific domain0.0001241Direct
Canonical RBD0.0001941Direct
Paired domain0.0002682Direct
Ovomucoid domain III-like0.0002976Direct
Laminin G-like module0.0003281Direct
EGF-type module0.0004408Direct
HMG-box0.0004576Direct
ets domain0.000494Direct
Classic zinc finger, C2H20.0006218Direct
Extracellular domain of cell surface receptors0.0009379Direct
Intermediate filament protein, coiled coil region0.01007Inherited
Tubulin, C-terminal domain0.1797Inherited
Tubulin, GTPase domain0.1797Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
Nop domain0Direct
HLH, helix-loop-helix DNA-binding domain0.000000000000005941Direct
"Winged helix" DNA-binding domain0.00000626Direct
14-3-3 protein0.00001611Direct
Growth factor receptor domain0.00001877Direct
Orange domain-like0.00002534Direct
Kazal-type serine protease inhibitors0.00004037Direct
PYP-like sensor domain (PAS domain)0.00004807Direct
EGF/Laminin0.0001636Direct
Voltage-gated potassium channels0.0001875Direct
HMG-box0.0001925Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0002771Direct
lambda repressor-like DNA-binding domains0.0003234Direct
RNA-binding domain, RBD0.0003257Direct
P-domain of calnexin/calreticulin0.0009719Direct
Nuclear receptor coactivator interlocking domain0.0009719Direct
Intermediate filament protein, coiled coil region0.005771Inherited
Tubulin C-terminal domain-like0.1453Inherited
Tubulin nucleotide-binding domain-like0.1698Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57184,100895
  • 57184 - Growth factor receptor domain
  • 100895 - Kazal-type serine protease inhibitors
  • 0Direct
    54631,54631
  • 54631 - CBS-domain pair
  • 54631 - CBS-domain pair
  • 0Direct
    57196,100895
  • 57196 - EGF/Laminin
  • 100895 - Kazal-type serine protease inhibitors
  • 0Direct
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.00001611Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00001611Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.00002534Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.0001654Direct
    47459,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0001696Direct
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.0003419Direct
    49899,57196
  • 49899 - Concanavalin A-like lectins/glucanases
  • 57196 - EGF/Laminin
  • 0.0003474Direct
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0003496Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.0003922Direct
    57716,48508
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 48508 - Nuclear receptor ligand-binding domain
  • 0.0007196Direct
    57196,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.0008897Direct
    49899,63887
  • 49899 - Concanavalin A-like lectins/glucanases
  • 63887 - P-domain of calnexin/calreticulin
  • 0.0009719Direct
    48726,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 0.0009719Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.1453Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0001266Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0004643Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0006508Direct
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.000654Direct
    49899,57196,57196
  • 49899 - Concanavalin A-like lectins/glucanases
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.000654Direct
    57196,49899,49899
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.000654Direct
    48726,56436,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0.0009719Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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