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Xenopus ANatomical entity (XAN): neural crest

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   primary germ layer [XAO:0003011] <4>(107|154) (108|70|28)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   ectoderm [XAO:0000001] <15>(61|84) (61|41|10)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
+ 1:   neuroectoderm [XAO:0000042] <9>(25|29) (26|13|4)
0:   neural crest [XAO:0000048] <8>(10|14) (11|5|2)
- 1:   cranial neural crest [XAO:0001001] <3>(7|11) (7|4|1)
- 1:   migratory neural crest cell [XAO:0004069] <1>(0|1) (0|1|0)
- 1:   trunk neural crest [XAO:0000319] <1>(0|1) (0|0|0)
- 1:   cardiac neural crest [XAO:0004190](1|1) (1|0|0)
- 1:   postmigratory neural crest cell [XAO:0004309](1|1) (1|1|0)
- 1:   premigratory neural crest cell [XAO:0004522](0|0) (0|0|0)
- 1:   sacral neural crest [XAO:0004192](0|0) (0|0|0)
- 1:   vagal neural crest [XAO:0004191](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
PriA/YqbF domain0Direct
Homeodomain-like0.000000000005173Direct
Sema domain0.0000001226Direct
Plexin repeat0.000000433Direct
Cytokine0.00001868Direct
"Winged helix" DNA-binding domain0.00002043Direct
GINS helical bundle-like0.0005854Direct
HMG-box0.0007334Direct
HLH, helix-loop-helix DNA-binding domain0.0008043Direct
Cyclin-like0.04502Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.0000000001598Direct
Sema domain0.00000003059Direct
Plexin repeat0.0000008288Direct
Fibroblast growth factors (FGF)0.00001062Direct
Forkhead DNA-binding domain0.00003132Direct
Paired domain0.0001567Direct
HMG-box0.00102Inherited
HLH, helix-loop-helix DNA-binding domain0.001387Inherited
Glutathione peroxidase-like0.001791Inherited
Arginine methyltransferase0.001878Inherited
ets domain0.004603Inherited
P4 origin-binding domain-like0.006274Inherited
Ephrin receptor ligand binding domain0.00703Inherited
Cyclin0.01591Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PriA/YqbF domain0Direct
Homeodomain-like0.000000000003569Direct
Sema domain0.00000008578Direct
Plexin repeat0.0000003045Direct
Cytokine0.00001346Direct
"Winged helix" DNA-binding domain0.00001475Direct
GINS helical bundle-like0.000439Direct
HMG-box0.0005511Direct
HLH, helix-loop-helix DNA-binding domain0.0006053Direct
RNA-binding domain, RBD0.0008939Direct
Cyclin-like0.03674Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00000008578Direct
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0002458Direct
    81383,52047
  • 81383 - F-box domain
  • 52047 - RNI-like
  • 0.001255Inherited
    56112,47769
  • 56112 - Protein kinase-like (PK-like)
  • 47769 - SAM/Pointed domain
  • 0.002876Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.01181Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0002458Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0009554Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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