SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): mesoderm

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + + 4:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + 2:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
+ 1:   primary germ layer [XAO:0003011] <4>(107|154) (108|70|28)
0:   mesoderm [XAO:0000050] <9>(28|39) (28|11|7)
- 1:   lateral plate mesoderm [XAO:0000311] <6>(10|12) (10|3|1)
- 1:   somite [XAO:0000058] <5>(9|10) (10|4|2)
- 1:   mesodermal cell [XAO:0003255] <1>(3|3) (3|0|0)
- 1:   paraxial mesoderm [XAO:0000259] <1>(5|9) (5|3|2)
- 1:   head mesoderm [XAO:0000053](5|6) (5|0|0)
- 1:   intermediate mesoderm [XAO:0000085](4|4) (4|1|0)
- 1:   migrating macrophage [XAO:0005037](0|0) (0|0|0)
- 1:   presumptive paraxial mesoderm [XAO:0004134](1|2) (1|0|0)
- 1:   splanchnic layer of lateral plate mesoderm [XAO:0000276](1|1) (1|1|1)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
Guanido kinase N-terminal domain0Direct
Homeodomain-like0.00000000000123Direct
HLH, helix-loop-helix DNA-binding domain0.00000000001277Direct
Frizzled cysteine-rich domain0.0000000000616Direct
Cytokine0.0000007013Direct
Cystine-knot cytokines0.000002053Direct
Orange domain-like0.00001433Direct
Troponin coil-coiled subunits0.00007663Direct
p53-like transcription factors0.0002875Direct
Snake toxin-like0.0003081Direct
SMAD MH1 domain0.0005579Direct
14-3-3 protein0.001962Inherited
FnI-like domain0.001962Inherited
PYP-like sensor domain (PAS domain)0.003755Inherited
"Winged helix" DNA-binding domain0.004196Inherited
Protein kinase-like (PK-like)0.01695Inherited
SRF-like0.02175Inherited
GroEL-intermediate domain like0.02532Inherited
GroEL equatorial domain-like0.02532Inherited
GroEL apical domain-like0.02532Inherited
Actin-like ATPase domain0.05393Inherited
Globin-like0.06017Inherited
Hemopexin-like domain0.06208Inherited
Tropomyosin0.08927Inherited
beta-beta-alpha zinc fingers0.1746Inherited
Metalloproteases ("zincins"), catalytic domain0.2441Inherited
Integrin domains0.2449Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Extracellular domain of cell surface receptors0Direct
Pointed domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Troponin I0Direct
Noggin0Direct
Guanido kinase N-terminal domain0Direct
Guanido kinase catalytic domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Homeodomain0.000000000005894Direct
HLH, helix-loop-helix DNA-binding domain0.00000000006866Direct
Frizzled cysteine-rich domain0.0000000001404Direct
ets domain0.000000002122Direct
Fibroblast growth factors (FGF)0.000003389Direct
Transforming growth factor (TGF)-beta0.00001192Direct
Hairy Orange domain0.00001802Direct
Growth factor receptor domain0.00003171Direct
L domain0.0000855Direct
Paired domain0.0001741Direct
VWC domain0.0002291Direct
T-box0.0004908Direct
Erythroid transcription factor GATA-10.0004931Direct
SMAD MH1 domain0.0005999Direct
Forkhead DNA-binding domain0.0007422Direct
14-3-3 protein0.002029Inherited
Parvalbumin0.002433Inherited
Actin/HSP700.004863Inherited
Protein kinases, catalytic subunit0.01195Inherited
SRF-like0.02099Inherited
Glutathione peroxidase-like0.0237Inherited
Classic zinc finger, C2H20.02679Inherited
Matrix metalloproteases, catalytic domain0.02865Inherited
Tropomyosin0.05422Inherited
Group II chaperonin (CCT, TRIC), apical domain0.06162Inherited
Globins0.06342Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.06766Inherited
Hemopexin-like domain0.06997Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.1361Inherited
Integrin domains0.2604Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
Guanido kinase N-terminal domain0Direct
Homeodomain-like0.000000000000848Direct
HLH, helix-loop-helix DNA-binding domain0.000000000008822Direct
Frizzled cysteine-rich domain0.00000000004263Direct
Cytokine0.0000004938Direct
Cystine-knot cytokines0.000001453Direct
Orange domain-like0.0000103Direct
Troponin coil-coiled subunits0.00005605Direct
p53-like transcription factors0.0002138Direct
Snake toxin-like0.0002294Direct
SMAD MH1 domain0.0004181Direct
FnI-like domain0.001497Inherited
14-3-3 protein0.001497Inherited
PYP-like sensor domain (PAS domain)0.002882Inherited
"Winged helix" DNA-binding domain0.00323Inherited
Protein kinase-like (PK-like)0.01338Inherited
SRF-like0.01728Inherited
GroEL-intermediate domain like0.02019Inherited
GroEL apical domain-like0.02019Inherited
GroEL equatorial domain-like0.02019Inherited
Actin-like ATPase domain0.04425Inherited
Globin-like0.04959Inherited
Hemopexin-like domain0.05119Inherited
Tropomyosin0.07491Inherited
beta-beta-alpha zinc fingers0.1531Inherited
Metalloproteases ("zincins"), catalytic domain0.2182Inherited
Integrin domains0.219Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0000103Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.00005605Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00005605Direct
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.0003547Direct
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.0003547Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.006173Inherited
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.01067Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.02756Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.1212Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0003547Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.0006302Direct
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.01728Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.02019Inherited
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02104Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.6378Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)