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Xenopus ANatomical entity (XAN): notochord

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
0:   notochord [XAO:0000055] <6>(10|14) (11|7|5)
- 1:   caudal notochord [XAO:0005239](0|0) (0|0|0)
- 1:   flexural organ [XAO:0005227](0|0) (0|0|0)
- 1:   notochordal sheath [XAO:0000415](0|0) (0|0|0)
- 1:   perichordal tissue [XAO:0004050](0|0) (0|0|0)
- 1:   rostral notochord [XAO:0005238](0|0) (0|0|0)
- 1:   vacuolated notochordal tissue [XAO:0004054](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Cystine-knot cytokines0.000008326Direct
EGF/Laminin0.00001217Direct
Homeodomain-like0.00003352Direct
Kazal-type serine protease inhibitors0.00006857Direct
Growth factor receptor domain0.00009329Direct
Hemopexin-like domain0.0001049Direct
Cytokine0.0001049Direct
Phosphoglycerate mutase-like0.0002595Direct
p53-like transcription factors0.0004146Direct
FnI-like domain0.0004172Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Transforming growth factor (TGF)-beta0.00001837Direct
T-box0.00003602Direct
Extracellular domain of cell surface receptors0.00003732Direct
Growth factor receptor domain0.00003984Direct
Homeodomain0.00004829Direct
Fibroblast growth factors (FGF)0.00006705Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0.00009557Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0.00009557Direct
Hemopexin-like domain0.0001167Direct
Matrix metalloproteases, catalytic domain0.000298Direct
ets domain0.0003055Direct
Ovomucoid domain III-like0.000616Direct
VWC domain0.000616Direct
Proprotein convertase P-domain0.0007325Direct


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cystine-knot cytokines0.000005957Direct
EGF/Laminin0.000008733Direct
Homeodomain-like0.00002431Direct
Kazal-type serine protease inhibitors0.0000501Direct
Growth factor receptor domain0.00006838Direct
Cytokine0.00007695Direct
Hemopexin-like domain0.00007695Direct
Phosphoglycerate mutase-like0.0001926Direct
p53-like transcription factors0.0003097Direct
FnI-like domain0.0003116Direct
Alpha-macroglobulin receptor domain0.0009324Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57184,100895
  • 57184 - Growth factor receptor domain
  • 100895 - Kazal-type serine protease inhibitors
  • 0.00007372Direct
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0.00007372Direct
    55486,50923
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0.00007838Direct
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.0001032Direct
    52743,49785
  • 52743 - Subtilisin-like
  • 49785 - Galactose-binding domain-like
  • 0.0005368Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0007197Direct
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0009324Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49899,49899,49899
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.00004693Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0001139Direct
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.0003386Direct
    47090,55486,50923
  • 47090 - PGBD-like
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 50923 - Hemopexin-like domain
  • 0.0004659Direct
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0009324Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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