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Xenopus ANatomical entity (XAN): somite

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + 2:   primary germ layer [XAO:0003011] <4>(107|154) (108|70|28)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + 2:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + 2:   musculoskeletal system [XAO:0000168] <2>(43|60) (45|26|15)
+ 1:   muscular system [XAO:0004042] <4>(28|41) (30|17|8)
+ 1:   mesoderm [XAO:0000050] <9>(28|39) (28|11|7)
+ 1:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
0:   somite [XAO:0000058] <5>(9|10) (10|4|2)
- 1:   sclerotome [XAO:0000397] <21>(0|0) (0|0|0)
- 1:   trunk somite [XAO:0000314] <13>(1|2) (1|0|1)
- 1:   tail somite [XAO:0003143] <5>(0|0) (0|0|1)
- 1:   head somite [XAO:0000313] <4>(1|1) (1|1|0)
- 1:   dermomyotome [XAO:0005080] <2>(3|3) (3|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00000011Direct
Frizzled cysteine-rich domain0.0002409Direct
PYP-like sensor domain (PAS domain)0.0003403Direct
FnI-like domain0.0007717Direct
Homeodomain-like0.0009761Direct
14-3-3 protein0.0009763Direct
SRF-like0.001412Inherited
Tropomyosin0.005232Inherited
Actin-like ATPase domain0.01343Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
HLH, helix-loop-helix DNA-binding domain0.0000002112Direct
Parvalbumin0.0001839Direct
Frizzled cysteine-rich domain0.0002547Direct
14-3-3 protein0.0009099Direct
L domain0.0009099Direct
SRF-like0.001273Inherited
Actin/HSP700.002182Inherited
Tropomyosin0.002412Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
HLH, helix-loop-helix DNA-binding domain0.00000007699Direct
Frizzled cysteine-rich domain0.0001786Direct
PYP-like sensor domain (PAS domain)0.0002536Direct
FnI-like domain0.0005803Direct
Homeodomain-like0.0007362Direct
14-3-3 protein0.0007363Direct
Cytokine0.0007743Direct
SRF-like0.001071Inherited
Tropomyosin0.004042Inherited
Actin-like ATPase domain0.01056Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.0007363Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.0007363Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.002795Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.002198Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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