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Xenopus ANatomical entity (XAN): marginal zone

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ 1:   embryonic structure [XAO:0003042] <57>(42|55) (44|26|12)
0:   marginal zone [XAO:0000068] <8>(8|12) (8|7|3)
- 1:   involuting marginal zone [XAO:0000074] <4>(3|4) (3|0|0)
- 1:   blastopore [XAO:0000208] <1>(3|5) (3|2|0)
- 1:   dorsal involuting marginal zone [XAO:0005136](0|0) (0|0|0)
- 1:   dorsal marginal zone [XAO:0000072](3|4) (3|3|2)
- 1:   dorso-lateral marginal zone [XAO:0000071](2|2) (2|0|0)
- 1:   non-involuting marginal zone [XAO:0000253](1|1) (1|2|1)
- 1:   ventral marginal zone [XAO:0000069](2|2) (2|0|0)
- 1:   ventro-lateral marginal zone [XAO:0000070](2|2) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
RNA-binding domain, RBD0.0005758Direct
Transducin (alpha subunit), insertion domain0.04289Inherited
HMG-box0.1359Inherited
Cystine-knot cytokines0.9439Inherited
p53-like transcription factors1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited
Homeodomain-like1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
SH3BGR (SH3-binding, glutamic acid-rich protein-like)0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Canonical RBD0.00009717Direct
Tandem AAA-ATPase domain0.0005757Direct
Eukaryotic type KH-domain (KH-domain type I)0.007301Inherited
Transducin (alpha subunit), insertion domain0.03239Inherited
HMG-box0.105Inherited
T-box0.7499Inherited
Transforming growth factor (TGF)-beta0.7724Inherited
Forkhead DNA-binding domain0.8949Inherited
Homeodomain1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
RNA-binding domain, RBD0.0004317Direct
Transducin (alpha subunit), insertion domain0.03498Inherited
HMG-box0.1177Inherited
Cystine-knot cytokines0.9156Inherited
Homeodomain-like1Inherited
p53-like transcription factors1Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
90209,90209
  • 90209 - Ran binding protein zinc finger-like
  • 90209 - Ran binding protein zinc finger-like
  • 0.0006346Direct
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.001653Inherited
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.03498Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.172Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.242Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.4513Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.8641Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.01308Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.06048Inherited
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.4513Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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