SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus ANatomical entity (XAN): prechordal plate

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ 1:   axial mesoderm [XAO:0000205] <1>(6|4) (6|0|0)
+ 1:   embryonic structure [XAO:0003042] <57>(42|55) (44|26|12)
0:   prechordal plate [XAO:0000079](4|3) (4|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Frizzled cysteine-rich domain0.000000002356Direct
Cystine-knot cytokines0.000009378Direct
TIMP-like0.0002895Direct
FnI-like domain0.0007967Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Frizzled cysteine-rich domain0.000000003086Direct
Transforming growth factor (TGF)-beta0.00002337Direct
VWC domain0.0001465Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Frizzled cysteine-rich domain0.000000001635Direct
Cystine-knot cytokines0.000006716Direct
TIMP-like0.0002154Direct
FnI-like domain0.0005995Direct


Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)