SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): endoderm

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + 2:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
+ + 2:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ 1:   primary germ layer [XAO:0003011] <4>(107|154) (108|70|28)
0:   endoderm [XAO:0000090] <13>(13|12) (13|4|0)
- 1:   archenteron [XAO:0000092] <3>(4|5) (4|2|0)
- 1:   central endoderm [XAO:0000295](0|0) (0|0|0)
- 1:   dorsal crest of the endoderm [XAO:0005045](0|0) (0|0|0)
- 1:   endodermal cell [XAO:0003248](0|0) (0|0|0)
- 1:   foregut endoderm [XAO:0004513](0|1) (0|0|0)
- 1:   head endoderm [XAO:0000091](0|0) (0|0|0)
- 1:   hindgut primordium [XAO:0004511](0|0) (0|0|0)
- 1:   hypochord [XAO:0000056](5|4) (5|0|0)
- 1:   midgut primordium [XAO:0004512](0|0) (0|0|0)
- 1:   pharyngeal endoderm [XAO:0004463](1|0) (1|0|0)
- 1:   sub-blastoporal endoderm [XAO:0004068](0|0) (0|0|0)
- 1:   suprablastoporal endoderm [XAO:0004067](0|0) (0|0|0)
- 1:   vegetal endoderm [XAO:0004066](1|1) (1|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.00000000002404Direct
TIMP-like0.0000002155Direct
Cystine-knot cytokines0.000004437Direct
FnI-like domain0.00001569Direct
Frizzled cysteine-rich domain0.00002427Direct
HMG-box0.0002341Direct
Growth factor receptor domain0.00213Inherited
Kazal-type serine protease inhibitors0.01296Inherited
TSP-1 type 1 repeat0.01955Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.03148Inherited
EGF/Laminin0.05159Inherited
Tubulin nucleotide-binding domain-like0.1352Inherited
Tubulin C-terminal domain-like0.1352Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.0000000003476Direct
Erythroid transcription factor GATA-10.000001302Direct
VWC domain0.000003744Direct
Frizzled cysteine-rich domain0.00002982Direct
Transforming growth factor (TGF)-beta0.00003656Direct
Complement components0.0002559Direct
HMG-box0.0003206Direct
Growth factor receptor domain0.01011Inherited
Ovomucoid domain III-like0.01029Inherited
TSP-1 type 1 repeat0.02389Inherited
Tubulin, C-terminal domain0.1376Inherited
Tubulin, GTPase domain0.1376Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.00000000001662Direct
TIMP-like0.000000151Direct
Cystine-knot cytokines0.000003158Direct
FnI-like domain0.00001129Direct
Frizzled cysteine-rich domain0.00001754Direct
HMG-box0.0001735Direct
Growth factor receptor domain0.001626Inherited
Kazal-type serine protease inhibitors0.01018Inherited
TSP-1 type 1 repeat0.01547Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.02527Inherited
EGF/Laminin0.04233Inherited
Tubulin C-terminal domain-like0.117Inherited
Tubulin nucleotide-binding domain-like0.117Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.000002167Direct
    50729,56112
  • 50729 - PH domain-like
  • 56112 - Protein kinase-like (PK-like)
  • 0.0003535Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0008501Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.117Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)