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Xenopus ANatomical entity (XAN): pharyngeal arch

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   head region [XAO:0000040] <4>(178|247) (182|140|57)
+ + 2:   anatomical region [XAO:0003186] <43>(373|484) (375|285|122)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + 2:   organism subdivision [XAO:0003013] <11>(378|498) (382|292|125)
+ 1:   multi-tissue structure [XAO:0003037] <130>(48|62) (51|32|14)
+ 1:   head [XAO:0003024] <22>(178|246) (182|140|57)
+ 1:   pharyngeal region [XAO:0004261] <7>(22|25) (23|9|6)
0:   pharyngeal arch [XAO:0000096] <3>(15|15) (16|3|3)
- 1:   branchial arch [XAO:0000099] <5>(4|4) (4|1|2)
- 1:   hyoid arch [XAO:0000098] <2>(1|1) (1|0|0)
- 1:   mandibular arch [XAO:0000097] <2>(1|2) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
Nop domain0Direct
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
Homeodomain-like0.00000000000008155Direct
RNA-binding domain, RBD0.000001904Direct
"Winged helix" DNA-binding domain0.000002094Direct
Cytokine0.000006796Direct
Frizzled cysteine-rich domain0.00002392Direct
p53-like transcription factors0.00007791Direct
HLH, helix-loop-helix DNA-binding domain0.0001103Direct
HMG-box0.0001943Direct
Cystine-knot cytokines0.0008238Direct
Plexin repeat0.04124Inherited
Sema domain0.04194Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
RUNT domain0Direct
Nop domain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
Homeodomain0.000000000008794Direct
Forkhead DNA-binding domain0.0000001047Direct
ets domain0.000002216Direct
Fibroblast growth factors (FGF)0.000003126Direct
Canonical RBD0.00001299Direct
Frizzled cysteine-rich domain0.00003567Direct
T-box0.0001745Direct
HLH, helix-loop-helix DNA-binding domain0.0002744Direct
HMG-box0.0003409Direct
Transforming growth factor (TGF)-beta0.0009092Direct
Sema domain0.02658Inherited
Plexin repeat0.04861Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GINS helical bundle-like0Direct
Hedgehog/DD-peptidase0Direct
Nop domain0Direct
PriA/YqbF domain0Direct
Homeodomain-like0.00000000000005611Direct
RNA-binding domain, RBD0.000001347Direct
"Winged helix" DNA-binding domain0.000001483Direct
Cytokine0.000004851Direct
Frizzled cysteine-rich domain0.00001728Direct
p53-like transcription factors0.00005699Direct
HLH, helix-loop-helix DNA-binding domain0.00008096Direct
HMG-box0.0001437Direct
Cystine-knot cytokines0.00062Direct
P-domain of calnexin/calreticulin0.0009282Direct
Plexin repeat0.03358Inherited
Sema domain0.03419Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.0004355Direct
    49899,63887
  • 49899 - Concanavalin A-like lectins/glucanases
  • 63887 - P-domain of calnexin/calreticulin
  • 0.0009282Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.03419Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.001808Inherited
    90257,90257,90257
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 90257 - Myosin rod fragments
  • 0.009727Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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