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Xenopus ANatomical entity (XAN): skeletal muscle

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + + 4:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + 3:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + 3:   musculoskeletal system [XAO:0000168] <2>(43|60) (45|26|15)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + 2:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
+ + 2:   muscular system [XAO:0004042] <4>(28|41) (30|17|8)
+ 1:   muscle [XAO:0000172] <10>(20|27) (22|11|4)
0:   skeletal muscle [XAO:0000174] <4>(16|18) (18|10|3)
- 1:   epaxial muscle [XAO:0003229](1|2) (1|0|0)
- 1:   hypaxial muscle [XAO:0003228](2|2) (2|0|0)
- 1:   skeletal muscle satellite cell [XAO:0005043](0|0) (0|0|0)
- 1:   skeletal myocyte [XAO:0004476](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
SRF-like0Direct
HSP90 C-terminal domain0Direct
GroEL-intermediate domain like0.000001458Direct
GroEL equatorial domain-like0.000001458Direct
Translation proteins SH3-like domain0.000002416Direct
Acyl-CoA dehydrogenase NM domain-like0.000009879Direct
Acyl-CoA dehydrogenase C-terminal domain-like0.000009879Direct
GroEL apical domain-like0.00001182Direct
Zn-binding ribosomal proteins0.0002177Direct
HSP20-like chaperones0.000229Direct
Actin-like ATPase domain0.0003006Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.0004598Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0006713Direct
Thiolase-like0.000951Direct
PYP-like sensor domain (PAS domain)0.8876Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
GABARAP-like0Direct
HSP90 C-terminal domain0Direct
Heat shock protein 90, HSP90, N-terminal domain0Direct
Hsp90 middle domain0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
SRF-like0Direct
Medium chain acyl-CoA dehydrogenase-like, C-terminal domain0.00000005544Direct
Medium chain acyl-CoA dehydrogenase, NM (N-terminal and middle) domains0.00000005544Direct
Proteasome subunits0.0000006147Direct
Actin/HSP700.000001335Direct
Group II chaperonin (CCT, TRIC), apical domain0.00000784Direct
Group II chaperonin (CCT, TRIC), ATPase domain0.0000403Direct
Thiolase-related0.0002582Direct
Translational machinery components0.0002582Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0006766Direct
28-residue LRR0.0656Inherited
Hypoxia-inducible factor Hif2a, C-terminal domain0.8772Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
HSP90 C-terminal domain0Direct
SRF-like0Direct
GroEL-intermediate domain like0.000001031Direct
GroEL equatorial domain-like0.000001031Direct
Translation proteins SH3-like domain0.000001714Direct
Acyl-CoA dehydrogenase NM domain-like0.000007079Direct
Acyl-CoA dehydrogenase C-terminal domain-like0.000007079Direct
GroEL apical domain-like0.000008476Direct
Zn-binding ribosomal proteins0.0001611Direct
HSP20-like chaperones0.0001696Direct
Actin-like ATPase domain0.0002236Direct
N-terminal nucleophile aminohydrolases (Ntn hydrolases)0.000344Direct
Heat shock protein 70kD (HSP70), peptide-binding domain0.0005039Direct
Thiolase-like0.0007171Direct
Pentein0.0008461Direct
LDH C-terminal domain-like0.0008461Direct
PYP-like sensor domain (PAS domain)0.8579Inherited
HLH, helix-loop-helix DNA-binding domain1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48371,46785
  • 48371 - ARM repeat
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.000005595Direct
    56645,47203
  • 56645 - Acyl-CoA dehydrogenase NM domain-like
  • 47203 - Acyl-CoA dehydrogenase C-terminal domain-like
  • 0.000007079Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.00003354Direct
    53067,53067
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 0.00006614Direct
    53067,100920
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0005039Direct
    53901,53901
  • 53901 - Thiolase-like
  • 53901 - Thiolase-like
  • 0.0007171Direct
    51735,56327
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 56327 - LDH C-terminal domain-like
  • 0.0008461Direct
    100920,100934
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0009067Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    53067,53067,100920
  • 53067 - Actin-like ATPase domain
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 0.0005039Direct
    53067,100920,100934
  • 53067 - Actin-like ATPase domain
  • 100920 - Heat shock protein 70kD (HSP70), peptide-binding domain
  • 100934 - Heat shock protein 70kD (HSP70), C-terminal subdomain
  • 0.0009067Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)