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Xenopus ANatomical entity (XAN): eye

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + + 4:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ + + 3:   anatomical region [XAO:0003186] <51>(370|484) (374|284|123)
+ + + 3:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + 2:   nervous system [XAO:0000177] <11>(134|201) (141|114|53)
+ + 2:   head region [XAO:0000040] <4>(178|245) (183|137|58)
+ + 2:   organism subdivision [XAO:0003013] <11>(375|498) (381|292|126)
+ + 2:   sensory system [XAO:0003194] <5>(39|51) (43|25|10)
+ + 2:   compound organ [XAO:0003041] <8>(332|444) (336|275|125)
+ 1:   cavitated compound organ [XAO:0003165] <21>(287|395) (292|247|114)
+ 1:   central nervous system [XAO:0000215] <7>(129|191) (135|108|49)
+ 1:   head [XAO:0003024] <22>(178|244) (183|137|58)
+ 1:   visual system [XAO:0003198] <5>(25|35) (29|15|7)
0:   eye [XAO:0000179] <14>(23|29) (26|11|6)
- 1:   retina [XAO:0000009] <6>(9|15) (11|7|2)
- 1:   lens [XAO:0000008] <3>(1|1) (1|0|0)
- 1:   choroid [XAO:0004460](0|0) (0|0|0)
- 1:   choroid fissure [XAO:0000474](0|0) (0|0|0)
- 1:   ciliary body [XAO:0000186](0|0) (0|0|0)
- 1:   conjunctiva [XAO:0000182](0|0) (0|0|0)
- 1:   cornea [XAO:0000180](0|0) (0|0|0)
- 1:   globe [XAO:0000181](0|0) (0|0|0)
- 1:   iris [XAO:0000185](0|0) (0|0|0)
- 1:   lower eyelid [XAO:0000007](0|0) (0|0|0)
- 1:   optic disc [XAO:0005066](2|2) (2|0|0)
- 1:   optic nerve [XAO:0000188](2|3) (3|0|0)
- 1:   pupil [XAO:0000283](0|0) (0|0|0)
- 1:   sclera [XAO:0000183](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Guanido kinase N-terminal domain0Direct
Hedgehog/DD-peptidase0Direct
Nop domain0Direct
14-3-3 protein0Direct
Homeodomain-like0.00000000000003319Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000008556Direct
Cytokine0.000000002703Direct
"Winged helix" DNA-binding domain0.0000002177Direct
Frizzled cysteine-rich domain0.00001128Direct
RNA-binding domain, RBD0.00005186Direct
Orange domain-like0.0001974Direct
SMAD MH1 domain0.0002419Direct
PYP-like sensor domain (PAS domain)0.0004278Direct
Zn-binding ribosomal proteins0.0009686Direct
Glutamine synthetase/guanido kinase0.0009686Direct
GINS helical bundle-like0.01404Inherited
gamma-Crystallin-like0.0542Inherited
Intermediate filament protein, coiled coil region0.06164Inherited
Ras GEF0.1977Inherited
Fibronectin type III0.3659Inherited
Voltage-gated potassium channels0.5919Inherited
POZ domain1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog (development protein), N-terminal signaling domain0Direct
PAS domain of steroid receptor coactivator 1A, NCo-A10Direct
14-3-3 protein0Direct
Guanido kinase catalytic domain0Direct
Guanido kinase N-terminal domain0Direct
Arrestin/Vps26-like0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Nop domain0Direct
Synuclein0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000004263Direct
Homeodomain0.00000000001753Direct
Fibroblast growth factors (FGF)0.00000001585Direct
Forkhead DNA-binding domain0.000008599Direct
Frizzled cysteine-rich domain0.00001545Direct
SMAD domain0.00006377Direct
Hairy Orange domain0.0002085Direct
SMAD MH1 domain0.0002498Direct
ets domain0.0003896Direct
Canonical RBD0.0005517Direct
I set domains0.004797Inherited
POU-specific domain0.04156Inherited
Crystallins/Ca-binding development proteins0.05496Inherited
Intermediate filament protein, coiled coil region0.07086Inherited
Fibronectin type III0.4141Inherited
Higher-molecular-weight phosphotyrosine protein phosphatases0.4239Inherited
Tetramerization domain of potassium channels0.5284Inherited
Voltage-gated potassium channels0.8084Inherited
Rhodopsin-like1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0Direct
Hedgehog/DD-peptidase0Direct
Nop domain0Direct
Synuclein0Direct
Guanido kinase N-terminal domain0Direct
Homeodomain-like0.00000000000002297Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000005926Direct
Cytokine0.00000000189Direct
"Winged helix" DNA-binding domain0.0000001537Direct
Frizzled cysteine-rich domain0.000008135Direct
RNA-binding domain, RBD0.00003799Direct
Orange domain-like0.0001467Direct
SMAD MH1 domain0.0001803Direct
PYP-like sensor domain (PAS domain)0.0003213Direct
Zn-binding ribosomal proteins0.0007342Direct
Glutamine synthetase/guanido kinase0.0007342Direct
p53-like transcription factors0.000972Direct
GINS helical bundle-like0.01106Inherited
gamma-Crystallin-like0.0446Inherited
Intermediate filament protein, coiled coil region0.0509Inherited
Immunoglobulin0.1585Inherited
Ras GEF0.1743Inherited
Fibronectin type III0.335Inherited
Galactose-binding domain-like0.406Inherited
Voltage-gated potassium channels0.5562Inherited
POZ domain1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0001467Direct
    47459,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0008668Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.02001Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0509Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.07302Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.07801Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00003581Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0002995Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0376Inherited
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.03871Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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