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Xenopus ANatomical entity (XAN): optic vesicle

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + 3:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   nervous system [XAO:0000177] <11>(133|200) (140|113|51)
+ + 2:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   sensory system [XAO:0003194] <5>(38|51) (43|25|10)
+ + 2:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ 1:   visual system [XAO:0003198] <5>(25|35) (28|16|7)
+ 1:   embryonic structure [XAO:0003042] <57>(42|55) (44|26|12)
0:   optic vesicle [XAO:0000228] <4>(5|7) (6|2|1)
- 1:   left optic vesicle [XAO:0005276](0|0) (0|0|0)
- 1:   pigment layer [XAO:0000261](0|0) (0|0|0)
- 1:   retinal layer [XAO:0000266](1|1) (1|0|0)
- 1:   right optic vesicle [XAO:0005277](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
HLH, helix-loop-helix DNA-binding domain0.00001198Direct
Frizzled cysteine-rich domain0.0002744Direct
HMG-box0.01085Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Noggin0Direct
P4 origin-binding domain-like0.00000006999Direct
HLH, helix-loop-helix DNA-binding domain0.00002143Direct
Frizzled cysteine-rich domain0.0003111Direct
Arginine methyltransferase0.0003563Direct
I set domains0.0008602Direct
HMG-box0.01218Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
HLH, helix-loop-helix DNA-binding domain0.000008595Direct
Frizzled cysteine-rich domain0.0002039Direct
F-box domain0.0009633Direct
HMG-box0.008475Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0.0008427Direct
    57850,49599
  • 57850 - RING/U-box
  • 49599 - TRAF domain-like
  • 0.0008427Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,49265,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0008427Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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