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Xenopus ANatomical entity (XAN): neural groove

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   primary germ layer [XAO:0003011] <4>(107|154) (108|70|28)
+ + + 3:   ectoderm [XAO:0000001] <15>(61|84) (61|41|10)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   neuroectoderm [XAO:0000042] <9>(25|29) (26|13|4)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
+ 1:   neural plate [XAO:0000249] <10>(18|18) (18|7|2)
0:   neural groove [XAO:0000248](7|6) (7|2|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Orange domain-like0.000002517Direct
HLH, helix-loop-helix DNA-binding domain0.00001896Direct
Kringle-like0.00002577Direct
Homeodomain-like0.00003277Direct
EGF/Laminin0.0003477Direct
Cystine-knot cytokines0.0004384Direct
Kazal-type serine protease inhibitors0.0007342Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Hairy Orange domain0.000002684Direct
Homeodomain0.000005783Direct
HLH, helix-loop-helix DNA-binding domain0.00002724Direct
Ovomucoid domain III-like0.0001147Direct
Kringle modules0.0001641Direct
Transforming growth factor (TGF)-beta0.0009116Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Orange domain-like0.000001786Direct
HLH, helix-loop-helix DNA-binding domain0.00001367Direct
Kringle-like0.00001864Direct
Homeodomain-like0.00002376Direct
EGF/Laminin0.0002592Direct
Cystine-knot cytokines0.0003278Direct
Kazal-type serine protease inhibitors0.0005517Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.000001786Direct
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.0005912Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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