SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): neural plate

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   primary germ layer [XAO:0003011] <4>(107|154) (108|70|28)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   ectoderm [XAO:0000001] <15>(61|84) (61|41|10)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   neuroectoderm [XAO:0000042] <9>(25|29) (26|13|4)
+ 1:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
0:   neural plate [XAO:0000249] <10>(18|18) (18|7|2)
- 1:   pre-chordal neural plate [XAO:0000045] <3>(10|11) (10|3|1)
- 1:   chordal neural plate [XAO:0000046] <2>(6|6) (6|3|0)
- 1:   neural fold [XAO:0004087] <2>(7|11) (8|3|1)
- 1:   neural plate border [XAO:0004104] <2>(5|6) (6|2|0)
- 1:   midbrain-hindbrain boundary [XAO:0000016] <1>(4|5) (4|1|1)
- 1:   Rohon-Beard neuron [XAO:0003022](1|1) (1|0|0)
- 1:   anterior neural ridge [XAO:0004209](4|5) (4|1|0)
- 1:   forebrain-midbrain boundary [XAO:0005027](0|0) (0|0|0)
- 1:   neural groove [XAO:0000248](7|6) (7|2|0)
- 1:   notoplate [XAO:0000047](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Hedgehog/DD-peptidase0Direct
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000006668Direct
Frizzled cysteine-rich domain0.00000000003985Direct
"Winged helix" DNA-binding domain0.00000002009Direct
HMG-box0.000007604Direct
lambda repressor-like DNA-binding domains0.00001458Direct
p53-like transcription factors0.00004308Direct
Snake toxin-like0.0003929Direct
Kazal-type serine protease inhibitors0.0008837Direct
GINS helical bundle-like0.004389Inherited
Orange domain-like0.006524Inherited
TIMP-like0.007534Inherited
beta-beta-alpha zinc fingers0.0111Inherited
Cystine-knot cytokines0.02126Inherited
Growth factor receptor domain0.03279Inherited
EGF/Laminin0.03634Inherited
Kringle-like0.05633Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Extracellular domain of cell surface receptors0Direct
Homeodomain0Direct
Noggin0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000003427Direct
Frizzled cysteine-rich domain0.00000000008699Direct
Forkhead DNA-binding domain0.0000000003818Direct
POU-specific domain0.000001657Direct
HMG-box0.00001286Direct
Cell cycle control phosphatase, catalytic domain0.00002175Direct
Paired domain0.0001897Direct
Sema domain0.0005075Direct
Ovomucoid domain III-like0.0006929Direct
Classic zinc finger, C2H20.00171Inherited
ets domain0.004741Inherited
Hairy Orange domain0.006695Inherited
Kringle modules0.05516Inherited
Transforming growth factor (TGF)-beta0.08892Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
Hedgehog/DD-peptidase0Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000004587Direct
Frizzled cysteine-rich domain0.00000000002756Direct
"Winged helix" DNA-binding domain0.00000001399Direct
HMG-box0.000005435Direct
lambda repressor-like DNA-binding domains0.00001048Direct
p53-like transcription factors0.00003133Direct
Snake toxin-like0.000293Direct
Kazal-type serine protease inhibitors0.0006657Direct
GINS helical bundle-like0.003382Inherited
Orange domain-like0.005059Inherited
TIMP-like0.005857Inherited
beta-beta-alpha zinc fingers0.008676Inherited
Cystine-knot cytokines0.01688Inherited
Growth factor receptor domain0.02637Inherited
EGF/Laminin0.02935Inherited
Kringle-like0.04627Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.00006009Direct
    63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.0001126Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.0001165Direct
    57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.004Inherited
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.005059Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.007574Inherited
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.03057Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.0001394Direct
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.03057Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)