SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus ANatomical entity (XAN): pronephric mesenchyme

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + 2:   tissue [XAO:0003040] <184>(180|248) (186|128|57)
+ 1:   mesenchyme [XAO:0003046] <11>(12|19) (13|6|2)
0:   pronephric mesenchyme [XAO:0000264](3|5) (3|2|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0.00002544Direct
Orange domain-like0.0001911Direct
lambda repressor-like DNA-binding domains0.0003325Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0.00002564Direct
POU-specific domain0.00004763Direct
Paired domain0.0001117Direct
Hairy Orange domain0.0001943Direct
Glutathione peroxidase-like0.0006933Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
14-3-3 protein0.00001839Direct
Orange domain-like0.0001413Direct
lambda repressor-like DNA-binding domains0.0002477Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0001413Direct
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.0001413Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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