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Xenopus ANatomical entity (XAN): cranial placode

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(436|565) (440|325|142)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   embryo [XAO:0000113] <8>(134|185) (134|89|38)
+ + 2:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + 2:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + 2:   tissue [XAO:0003040] <186>(182|250) (189|130|58)
+ + 2:   primary germ layer [XAO:0003011] <4>(109|155) (109|73|30)
+ 1:   neuroectoderm [XAO:0000042] <9>(27|31) (27|15|5)
+ 1:   ectoderm [XAO:0000001] <15>(62|85) (62|43|11)
+ 1:   embryonic structure [XAO:0003042] <58>(42|52) (43|27|13)
0:   cranial placode [XAO:0000305] <2>(12|14) (12|6|2)
- 1:   neurogenic placode [XAO:0004620] <6>(9|11) (9|3|0)
- 1:   non-neurogenic ectodermal placode [XAO:0005283] <2>(0|0) (0|0|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Homeodomain-like0.00000000000007097Direct
HLH, helix-loop-helix DNA-binding domain0.000000002183Direct
Plexin repeat0.00000001465Direct
Sema domain0.00000001984Direct
Orange domain-like0.000003284Direct
Glucocorticoid receptor-like (DNA-binding domain)0.00001017Direct
p53-like transcription factors0.0002353Direct
lambda repressor-like DNA-binding domains0.0006892Direct
Cytokine0.0009979Direct
Cystine-knot cytokines0.002314Inherited
HMG-box0.02488Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Homeodomain0.0000000000003104Direct
HLH, helix-loop-helix DNA-binding domain0.000000005499Direct
Sema domain0.000000007338Direct
Plexin repeat0.00000002546Direct
Hairy Orange domain0.000003438Direct
Fibroblast growth factors (FGF)0.0005856Direct
LIM domain0.0006262Direct
Paired domain0.0009262Direct
P4 origin-binding domain-like0.0009262Direct
POU-specific domain0.002831Inherited
Transforming growth factor (TGF)-beta0.003229Inherited
T-box0.005274Inherited
HMG-box0.02748Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Synuclein0Direct
Homeodomain-like0.00000000000004914Direct
HLH, helix-loop-helix DNA-binding domain0.000000001525Direct
Plexin repeat0.00000001027Direct
Sema domain0.00000001392Direct
Orange domain-like0.000002351Direct
Glucocorticoid receptor-like (DNA-binding domain)0.000007325Direct
p53-like transcription factors0.0001753Direct
lambda repressor-like DNA-binding domains0.0005201Direct
Cytokine0.0007568Direct
Cystine-knot cytokines0.001775Inherited
HMG-box0.01985Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00000001392Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.000002351Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.000004311Direct
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.00001832Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0009991Direct
    57440,57440
  • 57440 - Kringle-like
  • 57440 - Kringle-like
  • 0.004359Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.00001832Direct
    57196,57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1069Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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