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Xenopus ANatomical entity (XAN): cranial placode

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + 2:   tissue [XAO:0003040] <184>(180|248) (186|128|57)
+ + 2:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   primary germ layer [XAO:0003011] <4>(107|153) (108|70|28)
+ 1:   neuroectoderm [XAO:0000042] <9>(25|29) (26|14|4)
+ 1:   ectoderm [XAO:0000001] <15>(61|84) (61|42|10)
+ 1:   embryonic structure [XAO:0003042] <57>(42|55) (44|27|12)
0:   cranial placode [XAO:0000305] <1>(15|15) (15|6|1)
- 1:   neurogenic placode [XAO:0004620] <8>(12|12) (12|3|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
PriA/YqbF domain0Direct
GINS helical bundle-like0Direct
Homeodomain-like0.0000000000001049Direct
Plexin repeat0.00000001654Direct
HLH, helix-loop-helix DNA-binding domain0.00000002042Direct
Sema domain0.00000002238Direct
Orange domain-like0.000003539Direct
Glucocorticoid receptor-like (DNA-binding domain)0.000009005Direct
p53-like transcription factors0.000257Direct
lambda repressor-like DNA-binding domains0.0007336Direct
Cytokine0.00107Inherited
Cystine-knot cytokines0.001842Inherited
Frizzled cysteine-rich domain0.002995Inherited
HMG-box0.02628Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Homeodomain0.0000000000004584Direct
Sema domain0.000000008319Direct
Plexin repeat0.00000002882Direct
HLH, helix-loop-helix DNA-binding domain0.00000004868Direct
Hairy Orange domain0.000003703Direct
Fibroblast growth factors (FGF)0.0006286Direct
LIM domain0.0006801Direct
P4 origin-binding domain-like0.0009745Direct
Paired domain0.0009745Direct
Transforming growth factor (TGF)-beta0.002439Inherited
POU-specific domain0.002982Inherited
Frizzled cysteine-rich domain0.003221Inherited
T-box0.005549Inherited
HMG-box0.02909Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PriA/YqbF domain0Direct
Synuclein0Direct
GINS helical bundle-like0Direct
Homeodomain-like0.00000000000007223Direct
Plexin repeat0.00000001152Direct
HLH, helix-loop-helix DNA-binding domain0.00000001423Direct
Sema domain0.00000001559Direct
Orange domain-like0.000002517Direct
Glucocorticoid receptor-like (DNA-binding domain)0.000006451Direct
p53-like transcription factors0.0001908Direct
lambda repressor-like DNA-binding domains0.0005515Direct
Cytokine0.0008082Direct
Cystine-knot cytokines0.001405Inherited
Frizzled cysteine-rich domain0.002298Inherited
HMG-box0.02097Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.00000001559Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.000002517Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.000004867Direct
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.00001941Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.001054Inherited
    54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0.01156Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.00001941Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)