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Xenopus ANatomical entity (XAN): anatomical entity in vitro

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Xenopus anatomical entity [XAO:0000000] <9>
0:   anatomical entity in vitro [XAO:0003007] <4>(27|32) (28|14|2)
- 1:   cell-free extract [XAO:0004291] <1>(0|0) (0|0|0)
- 1:   Keller explant [XAO:0003053](0|0) (0|0|0)
- 1:   activin-induced ectoderm [XAO:0003008](0|0) (0|0|0)
- 1:   disaggregated/reaggregated ectoderm treated with activin [XAO:0003009](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
SPOC domain-like0Direct
4Fe-4S ferredoxins0Direct
Nop domain0Direct
Ferritin-like0Direct
Surp module (SWAP domain)0Direct
Alpha-L RNA-binding motif0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Tim10-like0Direct
LuxS/MPP-like metallohydrolase0Direct
RNA-binding domain, RBD0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
Mediator hinge subcomplex-like0Direct
Ribosomal proteins L15p and L18e0Direct
PLP-binding barrel0Direct
Alanine racemase C-terminal domain-like0Direct
KA1-like0Direct
Eukaryotic type KH-domain (KH-domain type I)0.00001241Direct
UBC-like0.00003212Direct
Cyclophilin-like0.00004654Direct
Sm-like ribonucleoproteins0.00007304Direct
Translation proteins SH3-like domain0.00009459Direct
Nucleic acid-binding proteins0.0001382Direct
GroEL-intermediate domain like0.0006599Direct
GroEL equatorial domain-like0.0006599Direct
ARM repeat0.000811Direct
WD40 repeat-like0.0009986Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Ran-binding domain0Direct
B56-like0Direct
Alanine racemase-like, N-terminal domain0Direct
Canonical RBD0Direct
Tim10/DDP0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
A20-like zinc finger0Direct
Adenain-like0Direct
Nop domain0Direct
RuBisCo LSMT catalytic domain0Direct
Surp module (SWAP domain)0Direct
S-adenosylhomocystein hydrolase0Direct
Ferritin0Direct
MPP-like0Direct
TRASH domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
Eukaryotic ODC-like0Direct
ECR1 N-terminal domain-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
Kinase associated domain 1, KA10Direct
Ribosomal proteins L15p and L18e0Direct
Cold shock DNA-binding domain-like0.000002904Direct
Ubiquitin-related0.000008509Direct
Eukaryotic type KH-domain (KH-domain type I)0.000008509Direct
Tandem AAA-ATPase domain0.00001686Direct
UBC-related0.00001817Direct
Cyclophilin (peptidylprolyl isomerase)0.00003296Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.00003296Direct
TBP-associated factors, TAFs0.0002079Direct
Prefoldin0.000488Direct
Cyclin0.000757Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Tim10-like0Direct
RNA-binding domain, RBD0Direct
Ribosomal proteins L15p and L18e0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
KA1-like0Direct
Surp module (SWAP domain)0Direct
LuxS/MPP-like metallohydrolase0Direct
Ferritin-like0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
SPOC domain-like0Direct
4Fe-4S ferredoxins0Direct
Alanine racemase C-terminal domain-like0Direct
Alpha-L RNA-binding motif0Direct
Mediator hinge subcomplex-like0Direct
Nop domain0Direct
PLP-binding barrel0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
Eukaryotic type KH-domain (KH-domain type I)0.000008989Direct
UBC-like0.00002349Direct
Cyclophilin-like0.00003414Direct
Sm-like ribonucleoproteins0.00005384Direct
Translation proteins SH3-like domain0.00006993Direct
Nucleic acid-binding proteins0.0001026Direct
GroEL equatorial domain-like0.0004992Direct
GroEL-intermediate domain like0.0004992Direct
ARM repeat0.0006149Direct
WD40 repeat-like0.0007589Direct
"Winged helix" DNA-binding domain0.0008205Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0Direct
    110324,50249
  • 110324 - Ribosomal L27 protein-like
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    64356,49447
  • 64356 - SNARE-like
  • 49447 - Second domain of Mu2 adaptin subunit (ap50) of ap2 adaptor
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    48371,46785
  • 48371 - ARM repeat
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    57196,100895
  • 57196 - EGF/Laminin
  • 100895 - Kazal-type serine protease inhibitors
  • 0Direct
    57756,57756
  • 57756 - Retrovirus zinc finger-like domains
  • 57756 - Retrovirus zinc finger-like domains
  • 0Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.00000003318Direct
    54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0.0000004792Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000617Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    54791,54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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