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Xenopus ANatomical entity (XAN): limb

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   organism subdivision [XAO:0003013] <11>(378|498) (382|292|125)
0:   limb [XAO:0003027] <3>(13|17) (15|3|4)
- 1:   hindlimb [XAO:0003031] <7>(4|4) (4|0|0)
- 1:   forelimb [XAO:0003030] <5>(1|1) (1|0|0)
- 1:   limb segment [XAO:0004294] <3>(2|1) (2|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Subunits of heterodimeric actin filament capping protein Capz0Direct
Alanine racemase C-terminal domain-like0Direct
SIS domain0Direct
F1F0 ATP synthase subunit C0Direct
PLP-binding barrel0Direct
ACP-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Translation proteins SH3-like domain0.00006292Direct
Spectrin repeat0.0004238Direct
p53-like transcription factors0.6246Inherited
Cytokine0.7898Inherited
Cystine-knot cytokines1Inherited
Homeodomain-like1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Eukaryotic ODC-like0Direct
ENTH domain0Direct
HCDH C-domain-like0Direct
Alanine racemase-like, N-terminal domain0Direct
F1F0 ATP synthase subunit C0Direct
DJ-1/PfpI0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Malic enzyme N-domain0Direct
SH3BGR (SH3-binding, glutamic acid-rich protein-like)0Direct
Alpha-adaptin ear subdomain-like0Direct
Clathrin adaptor appendage, alpha and beta chain-specific domain0Direct
Proteasome subunits0.0001315Direct
Canonical RBD0.000248Direct
T-box0.4764Inherited
Fibroblast growth factors (FGF)0.7161Inherited
Transforming growth factor (TGF)-beta0.815Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
ACP-like0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
F1F0 ATP synthase subunit C0Direct
Alanine racemase C-terminal domain-like0Direct
PLP-binding barrel0Direct
SIS domain0Direct
Translation proteins SH3-like domain0.00004592Direct
Spectrin repeat0.0003167Direct
RNA-binding domain, RBD0.0007767Direct
Aminoacid dehydrogenase-like, N-terminal domain0.0007985Direct
p53-like transcription factors0.588Inherited
Cytokine0.7559Inherited
Homeodomain-like1Inherited
Cystine-knot cytokines1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    103647,103647,49899
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    103647,103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0Direct
    47220,47220,47220
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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