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Xenopus ANatomical entity (XAN): surface structure

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   organism subdivision [XAO:0003013] <11>(378|498) (383|292|125)
0:   surface structure [XAO:0003028] <14>(22|27) (25|11|5)
- 1:   fin [XAO:0000002] <9>(7|8) (8|1|2)
- 1:   limb bud [XAO:0003161] <8>(3|5) (5|0|0)
- 1:   skin [XAO:0000023] <7>(11|14) (12|7|3)
- 1:   skin gland [XAO:0005071] <3>(0|0) (0|0|0)
- 1:   barbel [XAO:0004231](0|0) (0|0|0)
- 1:   cement gland [XAO:0000033](0|0) (1|0|0)
- 1:   cornea [XAO:0000180](0|0) (0|0|0)
- 1:   external gill [XAO:0000120](0|0) (0|0|0)
- 1:   fin crest [XAO:0004229](0|0) (0|0|0)
- 1:   lower eyelid [XAO:0000007](0|0) (0|0|0)
- 1:   proctodeum [XAO:0001019](0|0) (0|0|0)
- 1:   spiracle [XAO:0004232](0|0) (0|0|0)
- 1:   sulcus limitans of neural tube [XAO:0005070](0|0) (0|0|0)
- 1:   unicellular gland [XAO:0000470](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Nop domain0Direct
SIS domain0Direct
Homeodomain-like0.00001588Direct
HLH, helix-loop-helix DNA-binding domain0.0001434Direct
Intermediate filament protein, coiled coil region0.0001484Direct
SMAD MH1 domain0.0002044Direct
Cytokine0.0002991Direct
"Winged helix" DNA-binding domain0.0004818Direct
Tubulin C-terminal domain-like0.0005648Direct
Alpha-macroglobulin receptor domain0.0008417Direct
Tubulin nucleotide-binding domain-like0.001169Inherited
Orange domain-like0.002695Inherited
GroEL equatorial domain-like0.002695Inherited
GroEL-intermediate domain like0.00403Inherited
Plakin repeat0.004261Inherited
GroEL apical domain-like0.006768Inherited
Frizzled cysteine-rich domain0.03061Inherited
p53-like transcription factors0.06187Inherited
Growth factor receptor domain0.3704Inherited
Family A G protein-coupled receptor-like1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Polo-box duplicated region0Direct
14-3-3 protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
Ferritin0Direct
Nop domain0Direct
Homeodomain0.00000272Direct
Fibroblast growth factors (FGF)0.0001144Direct
Glutathione S-transferase (GST), C-terminal domain0.0001144Direct
SMAD MH1 domain0.000199Direct
Intermediate filament protein, coiled coil region0.0001992Direct
HLH, helix-loop-helix DNA-binding domain0.0002495Direct
Glutathione S-transferase (GST), N-terminal domain0.0003681Direct
VWC domain0.0003797Direct
Tubulin, GTPase domain0.0006305Direct
Tubulin, C-terminal domain0.0006305Direct
Alpha-macroglobulin receptor domain0.0007996Direct
Proteasome subunits0.002615Inherited
Hairy Orange domain0.002639Inherited
Plakin repeat0.004069Inherited
T-box0.005844Inherited
Frizzled cysteine-rich domain0.03183Inherited
Multidrug efflux transporter AcrB transmembrane domain0.07045Inherited
Forkhead DNA-binding domain0.117Inherited
Growth factor receptor domain0.1721Inherited
Transforming growth factor (TGF)-beta0.3749Inherited
Calmodulin-like0.4459Inherited
Rhodopsin-like1Inherited


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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
SIS domain0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
14-3-3 protein0Direct
Nop domain0Direct
Homeodomain-like0.00001142Direct
HLH, helix-loop-helix DNA-binding domain0.0001056Direct
Intermediate filament protein, coiled coil region0.0001094Direct
SMAD MH1 domain0.0001512Direct
Cytokine0.0002225Direct
"Winged helix" DNA-binding domain0.0003605Direct
Tubulin C-terminal domain-like0.0004234Direct
Alpha-macroglobulin receptor domain0.000634Direct
Tubulin nucleotide-binding domain-like0.0008854Direct
Orange domain-like0.002065Inherited
GroEL equatorial domain-like0.002065Inherited
GroEL-intermediate domain like0.003096Inherited
Plakin repeat0.003279Inherited
GroEL apical domain-like0.005251Inherited
BPTI-like0.006933Inherited
Frizzled cysteine-rich domain0.02456Inherited
p53-like transcription factors0.05102Inherited
Growth factor receptor domain0.3392Inherited
EGF/Laminin0.3962Inherited
Cystine-knot cytokines0.4132Inherited
Family A G protein-coupled receptor-like1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    64593,64593
  • 64593 - Intermediate filament protein, coiled coil region
  • 64593 - Intermediate filament protein, coiled coil region
  • 0Direct
    82615,82615
  • 82615 - Polo-box domain
  • 82615 - Polo-box domain
  • 0Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0001481Direct
    52490,55307
  • 52490 - Tubulin nucleotide-binding domain-like
  • 55307 - Tubulin C-terminal domain-like
  • 0.0004234Direct
    52833,47616
  • 52833 - Thioredoxin-like
  • 47616 - GST C-terminal domain-like
  • 0.001598Inherited
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.002065Inherited
    46966,47473
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.002574Inherited
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0.003279Inherited
    54849,52029
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.009691Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.0000211Direct
    46966,46966,47473
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.002574Inherited
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0.003279Inherited
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.01151Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.03967Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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