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Xenopus ANatomical entity (XAN): embryonic structure

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Xenopus anatomical entity [XAO:0000000] <9>
+ 1:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ 1:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ 1:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
0:   embryonic structure [XAO:0003042] <57>(42|55) (44|26|12)
- 1:   primordium [XAO:0003043] <20>(7|12) (8|2|0)
- 1:   foregut [XAO:0000232] <10>(8|8) (9|1|0)
- 1:   marginal zone [XAO:0000068] <8>(8|12) (8|7|3)
- 1:   neural tube [XAO:0003204] <7>(7|13) (8|2|2)
- 1:   lateral plate mesoderm [XAO:0000311] <6>(10|12) (10|3|1)
- 1:   visceral pouch [XAO:0000282] <6>(3|3) (3|0|0)
- 1:   optic vesicle [XAO:0000228] <4>(5|7) (6|2|1)
- 1:   vegetal yolk mass [XAO:0000281] <3>(3|5) (3|2|0)
- 1:   animal cap [XAO:0000036] <2>(1|1) (1|1|0)
- 1:   blastopore lip [XAO:0000078] <2>(3|5) (3|2|0)
- 1:   circumblastoporal collar [XAO:0000082] <2>(8|7) (8|2|1)
- 1:   hindgut [XAO:0000104] <2>(4|5) (4|0|0)
- 1:   anterior dorsal lateral plate region [XAO:0003051] <1>(4|5) (4|1|0)
- 1:   axial mesoderm [XAO:0000205] <1>(6|4) (6|0|0)
- 1:   blastopore [XAO:0000208] <1>(3|5) (3|2|0)
- 1:   cranial placode [XAO:0000305] <1>(15|15) (15|5|1)
- 1:   hatching gland [XAO:0000034] <1>(0|0) (0|0|0)
- 1:   paraxial mesoderm [XAO:0000259] <1>(5|9) (5|3|2)
- 1:   Brachet's cleft [XAO:0004456](0|0) (0|0|0)
- 1:   Rathke's pouch [XAO:0000430](0|0) (0|0|0)
- 1:   anterior foregut [XAO:0005127](0|0) (0|0|0)
- 1:   anterior neural tube [XAO:0000307](1|2) (1|0|0)
- 1:   cardiac mesoderm [XAO:0000235](2|4) (2|1|0)
- 1:   central vegetal yolk mass [XAO:0004395](0|0) (0|0|0)
- 1:   choroid fissure [XAO:0000474](0|0) (0|0|0)
- 1:   circumpharyngeal ridge [XAO:0004461](0|0) (0|0|0)
- 1:   cleavage furrow [XAO:0004492](0|0) (0|0|0)
- 1:   dorsal endoderm [XAO:0004462](0|0) (0|0|0)
- 1:   dorsal foregut [XAO:0005126](0|0) (0|0|0)
- 1:   dorsal lateral plate mesoderm [XAO:0004509](1|1) (1|0|0)
- 1:   dorsolateral neural tube [XAO:0004617](0|0) (0|0|0)
- 1:   endocardial tube [XAO:0000337](1|1) (1|0|0)
- 1:   glomeral mesenchyme [XAO:0000110](0|0) (0|0|0)
- 1:   hypobranchial placode [XAO:0000324](0|0) (0|0|0)
- 1:   lateral nasal prominence [XAO:0005193](0|0) (0|0|0)
- 1:   liver diverticulum [XAO:0000101](1|1) (2|0|0)
- 1:   lower blastopore lip [XAO:0000089](2|2) (2|0|0)
- 1:   medial nasal prominence [XAO:0005194](0|0) (0|0|0)
- 1:   midgut [XAO:0000103](3|3) (3|0|0)
- 1:   oral evagination [XAO:0000257](0|0) (0|0|0)
- 1:   peripheral vegetal yolk mass [XAO:0004384](0|0) (0|0|0)
- 1:   posterior foregut [XAO:0005128](0|0) (0|0|0)
- 1:   posterior neural tube [XAO:0000250](1|2) (1|1|0)
- 1:   prechordal plate [XAO:0000079](4|3) (4|0|0)
- 1:   presumptive axial mesoderm [XAO:0004406](0|0) (0|0|0)
- 1:   presumptive ectoderm [XAO:0004132](0|0) (0|0|0)
- 1:   presumptive midbrain-hindbrain boundary [XAO:0004086](5|5) (5|2|0)
- 1:   presumptive paraxial mesoderm [XAO:0004134](1|2) (1|0|0)
- 1:   presumptive rhombomere [XAO:0005026](2|2) (2|1|0)
- 1:   somatic layer of lateral plate mesoderm [XAO:0000271](0|0) (0|0|0)
- 1:   splanchnic layer of lateral plate mesoderm [XAO:0000276](1|1) (1|1|1)
- 1:   trunk placode [XAO:0000461](0|0) (0|0|0)
- 1:   upper blastopore lip [XAO:0000088](1|3) (1|2|0)
- 1:   vegetal endoderm [XAO:0004066](1|1) (1|0|0)
- 1:   ventral foregut [XAO:0005125](0|0) (0|0|0)
- 1:   ventral mesoderm [XAO:0004473](2|2) (2|0|0)
- 1:   ventrolateral neural tube [XAO:0004616](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
LysM domain0Direct
SRF-like0Direct
Cysteine-rich DNA binding domain, (DM domain)0Direct
14-3-3 protein0Direct
Alanine racemase C-terminal domain-like0Direct
Hedgehog/DD-peptidase0Direct
Synuclein0Direct
PLP-binding barrel0Direct
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
Guanido kinase N-terminal domain0Direct
Homeodomain-like0Direct
"Winged helix" DNA-binding domain0.00000000000001806Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000004318Direct
RNA-binding domain, RBD0.00000000004834Direct
Cytokine0.0000003371Direct
Frizzled cysteine-rich domain0.00000105Direct
HMG-box0.0000401Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0001857Direct
Cystine-knot cytokines0.0002184Direct
Sema domain0.0008058Direct
Snake toxin-like0.002939Inherited
p53-like transcription factors0.003644Inherited
Orange domain-like0.004184Inherited
GroEL-intermediate domain like0.004184Inherited
GroEL equatorial domain-like0.004184Inherited
GroEL apical domain-like0.01325Inherited
Plexin repeat0.01396Inherited
lambda repressor-like DNA-binding domains0.02533Inherited
Transducin (alpha subunit), insertion domain0.09654Inherited
beta-beta-alpha zinc fingers0.1182Inherited
TIMP-like0.1272Inherited
Mannose 6-phosphate receptor domain0.2033Inherited
Alpha-macroglobulin receptor domain0.2263Inherited
Globin-like0.2588Inherited
EGF/Laminin0.2725Inherited
FnI-like domain0.2768Inherited
Kazal-type serine protease inhibitors0.2892Inherited
Tropomyosin0.3306Inherited
DNA-binding domain0.389Inherited
LDL receptor-like module0.5589Inherited
Terpenoid cyclases/Protein prenyltransferases0.5772Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Eukaryotic ODC-like0Direct
Synuclein0Direct
Extracellular domain of cell surface receptors0Direct
LysM domain0Direct
Alanine racemase-like, N-terminal domain0Direct
Homeodomain0Direct
Fibroblast growth factors (FGF)0Direct
14-3-3 protein0Direct
Pointed domain0Direct
Ran-binding domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
Cysteine-rich DNA binding domain, (DM domain)0Direct
Troponin I0Direct
Noggin0Direct
SH3BGR (SH3-binding, glutamic acid-rich protein-like)0Direct
Guanido kinase N-terminal domain0Direct
Guanido kinase catalytic domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
SRF-like0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000000002264Direct
Forkhead DNA-binding domain0.000000000001074Direct
Canonical RBD0.00000000001975Direct
ets domain0.00000004961Direct
Transforming growth factor (TGF)-beta0.000001395Direct
Frizzled cysteine-rich domain0.000001441Direct
HMG-box0.00006544Direct
Sema domain0.0003914Direct
T-box0.0004257Direct
POU-specific domain0.001049Inherited
LIM domain0.003592Inherited
Hairy Orange domain0.004224Inherited
P4 origin-binding domain-like0.005738Inherited
Cell cycle control phosphatase, catalytic domain0.005738Inherited
Group II chaperonin (CCT, TRIC), apical domain0.01041Inherited
Group II chaperonin (CCT, TRIC), intermediate domain0.01548Inherited
Plexin repeat0.01674Inherited
Group II chaperonin (CCT, TRIC), ATPase domain0.02459Inherited
Erythroid transcription factor GATA-10.02459Inherited
Eukaryotic type KH-domain (KH-domain type I)0.02505Inherited
VWC domain0.03112Inherited
Glutathione peroxidase-like0.05937Inherited
Paired domain0.06079Inherited
Tandem AAA-ATPase domain0.07825Inherited
Transducin (alpha subunit), insertion domain0.09857Inherited
Classic zinc finger, C2H20.1129Inherited
Class I aldolase0.1198Inherited
Tropomyosin0.1915Inherited
Mannose 6-phosphate receptor domain0.203Inherited
Alpha-macroglobulin receptor domain0.2239Inherited
Arginine methyltransferase0.2239Inherited
Globins0.2601Inherited
Complement components0.3348Inherited
LDL receptor-like module0.5832Inherited
I set domains0.7432Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cysteine-rich DNA binding domain, (DM domain)0Direct
LysM domain0Direct
Homeodomain-like0Direct
GINS helical bundle-like0Direct
Synuclein0Direct
Hedgehog/DD-peptidase0Direct
14-3-3 protein0Direct
Alanine racemase C-terminal domain-like0Direct
Guanido kinase N-terminal domain0Direct
PLP-binding barrel0Direct
SRF-like0Direct
PriA/YqbF domain0Direct
"Winged helix" DNA-binding domain0.00000000000001242Direct
HLH, helix-loop-helix DNA-binding domain0.00000000000002969Direct
RNA-binding domain, RBD0.00000000003344Direct
Cytokine0.0000002368Direct
Frizzled cysteine-rich domain0.0000007409Direct
HMG-box0.00002914Direct
Glucocorticoid receptor-like (DNA-binding domain)0.0001373Direct
Cystine-knot cytokines0.0001617Direct
Sema domain0.0006064Direct
Snake toxin-like0.002255Inherited
p53-like transcription factors0.002797Inherited
GroEL-intermediate domain like0.00322Inherited
Orange domain-like0.00322Inherited
GroEL equatorial domain-like0.00322Inherited
GroEL apical domain-like0.01041Inherited
Plexin repeat0.01098Inherited
lambda repressor-like DNA-binding domains0.0202Inherited
Transducin (alpha subunit), insertion domain0.08156Inherited
beta-beta-alpha zinc fingers0.1013Inherited
TIMP-like0.1097Inherited
F-box domain0.1412Inherited
Mannose 6-phosphate receptor domain0.1796Inherited
Alpha-macroglobulin receptor domain0.2014Inherited
Globin-like0.2317Inherited
EGF/Laminin0.2449Inherited
FnI-like domain0.249Inherited
Kazal-type serine protease inhibitors0.2607Inherited
Tropomyosin0.3007Inherited
DNA-binding domain0.3574Inherited
LDL receptor-like module0.5219Inherited
Terpenoid cyclases/Protein prenyltransferases0.5399Inherited
E set domains0.9268Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0Direct
    103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0Direct
    53223,51735
  • 53223 - Aminoacid dehydrogenase-like, N-terminal domain
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0Direct
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0000002798Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.00002817Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.0006064Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.0006064Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.00322Inherited
    90209,90209
  • 90209 - Ran binding protein zinc finger-like
  • 90209 - Ran binding protein zinc finger-like
  • 0.01295Inherited
    103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.02029Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.02328Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.06035Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.06532Inherited
    47895,52540
  • 47895 - Transducin (alpha subunit), insertion domain
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.08156Inherited
    57196,57196
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0.1021Inherited
    57850,49599
  • 57850 - RING/U-box
  • 49599 - TRAF domain-like
  • 0.1049Inherited
    57196,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.1097Inherited
    52540,52540
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 0.1745Inherited
    57184,57184
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.4722Inherited
    50044,55550
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 0.5007Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    103647,103647,49899
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    103647,103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0Direct
    47220,47220,47220
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0Direct
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.004627Inherited
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.01041Inherited
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.02029Inherited
    57196,57196,57184
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 0.05068Inherited
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.05116Inherited
    48726,49265,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.1049Inherited
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0.106Inherited
    57667,57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.9517Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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