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Xenopus ANatomical entity (XAN): primordium

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ 1:   embryonic structure [XAO:0003042] <57>(42|55) (44|26|12)
0:   primordium [XAO:0003043] <20>(7|12) (8|2|0)
- 1:   fused heart primordium [XAO:0000336] <1>(0|3) (0|0|0)
- 1:   lateral line primordium [XAO:0004411] <1>(0|0) (0|0|0)
- 1:   blastocoel anlage [XAO:0000206](0|0) (0|0|0)
- 1:   cement gland primordium [XAO:0000049](1|1) (1|0|0)
- 1:   dorsal pancreatic bud [XAO:0000467](0|0) (0|0|0)
- 1:   eye primordium [XAO:0000227](3|2) (3|1|0)
- 1:   first pancreatic bud [XAO:0001101](0|0) (0|0|0)
- 1:   foregut endoderm [XAO:0004513](0|1) (0|0|0)
- 1:   gall bladder primordium [XAO:0004205](0|0) (0|0|0)
- 1:   gill primordium [XAO:0000448](0|0) (0|0|0)
- 1:   hatching gland primordium [XAO:0004394](0|0) (0|0|0)
- 1:   hindgut primordium [XAO:0004511](0|0) (0|0|0)
- 1:   hypophyseal primordium [XAO:0000267](0|1) (0|0|0)
- 1:   laryngeal muscle primordium [XAO:0004448](0|0) (0|0|0)
- 1:   left-right organizer primordium [XAO:0005169](0|0) (0|0|0)
- 1:   liver primordium [XAO:0003266](2|2) (2|0|0)
- 1:   midgut primordium [XAO:0004512](0|0) (0|0|0)
- 1:   rhombic lip [XAO:0004135](0|0) (0|0|0)
- 1:   right spleen primordium [XAO:0000327](0|0) (0|0|0)
- 1:   stomodeal-hypophyseal primordium [XAO:0000032](3|2) (3|1|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Frizzled cysteine-rich domain0.0000000233Direct
Homeodomain-like0.0000002816Direct
HLH, helix-loop-helix DNA-binding domain0.0006352Direct
TIMP-like0.006445Inherited
Mannose 6-phosphate receptor domain0.008092Inherited
DNA-binding domain0.01304Inherited
Plexin repeat0.1185Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Noggin0Direct
Frizzled cysteine-rich domain0.00000003289Direct
Erythroid transcription factor GATA-10.000004217Direct
Homeodomain0.000009517Direct
Paired domain0.00001554Direct
Class I aldolase0.000156Direct
HLH, helix-loop-helix DNA-binding domain0.001027Inherited
Glutathione peroxidase-like0.002111Inherited
Mannose 6-phosphate receptor domain0.00749Inherited
T-box0.0101Inherited
Transforming growth factor (TGF)-beta0.04069Inherited
Plexin repeat0.1222Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Frizzled cysteine-rich domain0.00000001624Direct
Homeodomain-like0.0000001976Direct
HLH, helix-loop-helix DNA-binding domain0.0004765Direct
p53-like transcription factors0.0009053Direct
TIMP-like0.004997Inherited
Mannose 6-phosphate receptor domain0.006294Inherited
DNA-binding domain0.01024Inherited
Plexin repeat0.1016Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63501,50242
  • 63501 - Frizzled cysteine-rich domain
  • 50242 - TIMP-like
  • 0.001399Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.3697Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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