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Xenopus ANatomical entity (XAN): endomesoderm

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + 2:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
+ 1:   primary germ layer [XAO:0003011] <4>(107|154) (108|70|28)
0:   endomesoderm [XAO:0003044](32|40) (32|20|10)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Mib/herc2 domain-like0Direct
DLC0Direct
DnaJ/Hsp40 cysteine-rich domain0Direct
Ribosomal L27 protein-like0Direct
TSP type-3 repeat0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
PEBP-like0Direct
Zn-binding ribosomal proteins0Direct
Cation efflux protein cytoplasmic domain-like0Direct
Alanine racemase C-terminal domain-like0Direct
Surp module (SWAP domain)0Direct
WGR domain-like0Direct
Succinyl-CoA synthetase domains0Direct
PAH2 domain0Direct
Nop domain0Direct
HSP90 C-terminal domain0Direct
RBP11-like subunits of RNA polymerase0Direct
Domain of poly(ADP-ribose) polymerase0Direct
Nucleoplasmin-like core domain0Direct
F1F0 ATP synthase subunit C0Direct
PLP-binding barrel0Direct
Nucleoporin domain0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
E2F-DP heterodimerization region0Direct
Tim10-like0Direct
Ribulose-phoshate binding barrel0Direct
alpha-catenin/vinculin-like0Direct
RNA-binding domain, RBD0.00000002396Direct
Nucleic acid-binding proteins0.0005837Direct
GroEL-intermediate domain like0.0007218Direct
GroEL equatorial domain-like0.0007218Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Cell cycle transcription factor e2f-dp0Direct
Eukaryotic ODC-like0Direct
Tim10/DDP0Direct
Succinyl-CoA synthetase domains0Direct
TRASH domain0Direct
Nucleoplasmin-like core domain0Direct
N-type ATP pyrophosphatases0Direct
Class II glutamine amidotransferases0Direct
Mib/herc2 domain0Direct
Nop domain0Direct
HSP90 C-terminal domain0Direct
E2F dimerization segment0Direct
DnaJ/Hsp40 cysteine-rich domain0Direct
Alanine racemase-like, N-terminal domain0Direct
F1F0 ATP synthase subunit C0Direct
RNA-polymerase beta0Direct
DLC0Direct
Ran-binding domain0Direct
Ferritin0Direct
Phosphoribosylpyrophosphate synthetase-like0Direct
ECR1 N-terminal domain-like0Direct
Branched-chain alpha-keto acid dehydrogenase PP module0Direct
Phosphatidylethanolamine binding protein0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
PAH2 domain0Direct
Thrombospondin C-terminal domain0Direct
Heat shock protein 90, HSP90, N-terminal domain0Direct
S-adenosylhomocystein hydrolase0Direct
Surp module (SWAP domain)0Direct
Hsp90 middle domain0Direct
Serine carboxypeptidase-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
WGR domain0Direct
Domain of poly(ADP-ribose) polymerase0Direct
NTF2-like0Direct
HAT/Suf repeat0Direct
TSP type-3 repeat0Direct
Pumilio repeat0Direct
alpha-catenin/vinculin0Direct
Canonical RBD0.00000001729Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Nucleoplasmin-like core domain0Direct
alpha-catenin/vinculin-like0Direct
Ribosomal proteins S24e, L23 and L15e0Direct
C-terminal domain of alpha and beta subunits of F1 ATP synthase0Direct
HSP90 C-terminal domain0Direct
PEBP-like0Direct
Succinyl-CoA synthetase domains0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Domain of poly(ADP-ribose) polymerase0Direct
Ribulose-phoshate binding barrel0Direct
F1F0 ATP synthase subunit C0Direct
Ribosomal L27 protein-like0Direct
Surp module (SWAP domain)0Direct
Tim10-like0Direct
Mib/herc2 domain-like0Direct
DLC0Direct
Alanine racemase C-terminal domain-like0Direct
TSP type-3 repeat0Direct
DnaJ/Hsp40 cysteine-rich domain0Direct
RBP11-like subunits of RNA polymerase0Direct
PLP-binding barrel0Direct
Cation efflux protein cytoplasmic domain-like0Direct
E2F-DP heterodimerization region0Direct
PAH2 domain0Direct
Nucleoporin domain0Direct
WGR domain-like0Direct
Nop domain0Direct
Zn-binding ribosomal proteins0Direct
RNA-binding domain, RBD0.0000000167Direct
Nucleic acid-binding proteins0.0004376Direct
GroEL-intermediate domain like0.0005421Direct
GroEL equatorial domain-like0.0005421Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
81296,48239
  • 81296 - E set domains
  • 48239 - Terpenoid cyclases/Protein prenyltransferases
  • 0Direct
    46565,57938
  • 46565 - Chaperone J-domain
  • 57938 - DnaJ/Hsp40 cysteine-rich domain
  • 0Direct
    88723,47807
  • 88723 - PIN domain-like
  • 47807 - 5' to 3' exonuclease, C-terminal subdomain
  • 0Direct
    103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0Direct
    48371,46785
  • 48371 - ARM repeat
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    46785,144074
  • 46785 - "Winged helix" DNA-binding domain
  • 144074 - E2F-DP heterodimerization region
  • 0Direct
    53223,51735
  • 53223 - Aminoacid dehydrogenase-like, N-terminal domain
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 0Direct
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0Direct
    110324,50249
  • 110324 - Ribosomal L27 protein-like
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    47220,47220
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    161111,160240
  • 161111 - Cation efflux protein transmembrane domain-like
  • 160240 - Cation efflux protein cytoplasmic domain-like
  • 0Direct
    52540,47917
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 47917 - C-terminal domain of alpha and beta subunits of F1 ATP synthase
  • 0Direct
    48592,54849
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 0Direct
    47587,56399
  • 47587 - Domain of poly(ADP-ribose) polymerase
  • 56399 - ADP-ribosylation
  • 0Direct
    56059,52210
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 52210 - Succinyl-CoA synthetase domains
  • 0Direct
    54534,54534
  • 54534 - FKBP-like
  • 54534 - FKBP-like
  • 0Direct
    142921,47587
  • 142921 - WGR domain-like
  • 47587 - Domain of poly(ADP-ribose) polymerase
  • 0Direct
    103647,49899
  • 103647 - TSP type-3 repeat
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    57938,49493
  • 57938 - DnaJ/Hsp40 cysteine-rich domain
  • 49493 - HSP40/DnaJ peptide-binding domain
  • 0Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    142921,47587,56399
  • 142921 - WGR domain-like
  • 47587 - Domain of poly(ADP-ribose) polymerase
  • 56399 - ADP-ribosylation
  • 0Direct
    48592,54849,52029
  • 48592 - GroEL equatorial domain-like
  • 54849 - GroEL-intermediate domain like
  • 52029 - GroEL apical domain-like
  • 0Direct
    54768,54768,54768
  • 54768 - dsRNA-binding domain-like
  • 54768 - dsRNA-binding domain-like
  • 54768 - dsRNA-binding domain-like
  • 0Direct
    46565,57938,49493
  • 46565 - Chaperone J-domain
  • 57938 - DnaJ/Hsp40 cysteine-rich domain
  • 49493 - HSP40/DnaJ peptide-binding domain
  • 0Direct
    103647,103647,49899
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    54791,54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct
    50249,50249,50249
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    103647,103647,103647
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 103647 - TSP type-3 repeat
  • 0Direct
    47220,47220,47220
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0Direct
    57938,49493,49493
  • 57938 - DnaJ/Hsp40 cysteine-rich domain
  • 49493 - HSP40/DnaJ peptide-binding domain
  • 49493 - HSP40/DnaJ peptide-binding domain
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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