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Xenopus ANatomical entity (XAN): mesenchyme

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
0:   mesenchyme [XAO:0003046] <11>(13|19) (13|6|2)
- 1:   anterior-proximal mesenchyme [XAO:0004408](0|0) (0|0|0)
- 1:   distal mesenchyme [XAO:0004056](1|1) (1|0|0)
- 1:   head mesenchyme [XAO:0004307](4|5) (4|1|0)
- 1:   interdigital mesenchyme [XAO:0004410](0|0) (0|0|0)
- 1:   mandibular mesenchyme [XAO:0004508](0|0) (0|0|0)
- 1:   mesonephric mesenchyme [XAO:0000291](0|0) (0|0|0)
- 1:   pharyngeal mesenchyme [XAO:0004524](0|1) (0|0|1)
- 1:   posterior-proximal mesenchyme [XAO:0004409](0|0) (0|0|0)
- 1:   pronephric mesenchyme [XAO:0000264](3|5) (3|2|0)
- 1:   proximal mesenchyme [XAO:0004407](0|0) (0|0|0)
- 1:   sclerotomal mesenchyme [XAO:0000414](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.000000009551Direct
Frizzled cysteine-rich domain0.00000004531Direct
p53-like transcription factors0.0000009459Direct
Growth factor receptor domain0.00002173Direct
Snake toxin-like0.0001129Direct
Phosphoglycerate mutase-like0.0002737Direct
Cystine-knot cytokines0.0003754Direct
"Winged helix" DNA-binding domain0.0008419Direct
Cytokine0.001178Inherited
14-3-3 protein0.001276Inherited
lambda repressor-like DNA-binding domains0.0066Inherited
Orange domain-like0.008003Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
HLH, helix-loop-helix DNA-binding domain0.0000000289Direct
Frizzled cysteine-rich domain0.00000006929Direct
T-box0.000002427Direct
Extracellular domain of cell surface receptors0.000042Direct
Forkhead DNA-binding domain0.00007139Direct
Transforming growth factor (TGF)-beta0.0001753Direct
Growth factor receptor domain0.0002771Direct
VWC domain0.0006879Direct
Fibronectin type II module0.0008028Direct
Fibroblast growth factors (FGF)0.0008788Direct
14-3-3 protein0.001301Inherited
POU-specific domain0.00214Inherited
Paired domain0.004985Inherited
I set domains0.005601Inherited
Hairy Orange domain0.008177Inherited
Glutathione peroxidase-like0.01765Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.000000006642Direct
Frizzled cysteine-rich domain0.00000003163Direct
p53-like transcription factors0.0000006671Direct
Growth factor receptor domain0.0000157Direct
Snake toxin-like0.00008284Direct
Phosphoglycerate mutase-like0.0002034Direct
Cystine-knot cytokines0.0002799Direct
"Winged helix" DNA-binding domain0.000634Direct
Cytokine0.0008921Direct
14-3-3 protein0.0009675Direct
lambda repressor-like DNA-binding domains0.005119Inherited
Orange domain-like0.006222Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    57440,57440
  • 57440 - Kringle-like
  • 57440 - Kringle-like
  • 0.00002833Direct
    49785,57184
  • 49785 - Galactose-binding domain-like
  • 57184 - Growth factor receptor domain
  • 0.0002534Direct
    56112,47769
  • 56112 - Protein kinase-like (PK-like)
  • 47769 - SAM/Pointed domain
  • 0.0005574Direct
    90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0.00207Inherited
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.006222Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57440,57440,57440
  • 57440 - Kringle-like
  • 57440 - Kringle-like
  • 57440 - Kringle-like
  • 0.00007661Direct
    48726,48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.04331Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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