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Xenopus ANatomical entity (XAN): egg

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical structure [XAO:0003000] <11>(577|733) (577|400|163)
+ + + + 4:   anatomical group [XAO:0003001] <2>(414|530) (418|309|134)
+ + + + 4:   whole organism [XAO:0003004] <12>(461|598) (465|335|145)
+ + + 3:   anatomical system [XAO:0003002] <19>(283|382) (289|204|93)
+ + + 3:   urogenital system [XAO:0000140] <7>(182|244) (182|122|58)
+ + + 3:   cell [XAO:0003012] <71>(92|101) (93|35|16)
+ + 2:   germ cell [XAO:0000111] <9>(56|61) (58|22|10)
+ + 2:   genital system [XAO:0000142] <3>(148|195) (148|94|43)
+ 1:   gamete [XAO:0003150] <2>(39|46) (39|14|5)
0:   egg [XAO:0003048](39|46) (39|14|5)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Nucleoplasmin-like core domain0Direct
LysM domain0Direct
PAH2 domain0Direct
RBP11-like subunits of RNA polymerase0Direct
USP8 N-terminal domain-like0Direct
Tim10-like0Direct
Mediator hinge subcomplex-like0Direct
Nucleoporin domain0Direct
FAD-dependent thiol oxidase0Direct
GINS helical bundle-like0Direct
Transcription factor IIA (TFIIA), beta-barrel domain0Direct
PriA/YqbF domain0Direct
Cysteine alpha-hairpin motif0Direct
Restriction endonuclease-like0Direct
Translational machinery components0Direct
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex0Direct
PLP-binding barrel0Direct
Surp module (SWAP domain)0Direct
LexA/Signal peptidase0Direct
The spindle assembly checkpoint protein mad20Direct
SIS domain0Direct
PABC (PABP) domain0Direct
TK C-terminal domain-like0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
BSD domain-like0Direct
Zn-finger domain of Sec23/240Direct
Alanine racemase C-terminal domain-like0Direct
DLC0Direct
Nop domain0Direct
LuxS/MPP-like metallohydrolase0Direct
Ribosomal protein L10-like0Direct
Transcription factor IIA (TFIIA), alpha-helical domain0Direct
RNA-binding domain, RBD0.000000000000008497Direct
Nucleic acid-binding proteins0.000001584Direct
Sm-like ribonucleoproteins0.000003706Direct
ARM repeat0.00004517Direct
UBC-like0.0001318Direct
S-adenosyl-L-methionine-dependent methyltransferases0.0001855Direct
Cyclin-like0.0008835Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Translation initiation factor eIF4e0Direct
Branched-chain alpha-keto acid dehydrogenase beta-subunit, C-terminal-domain0Direct
NTF2-like0Direct
PABC (PABP) domain0Direct
E2F dimerization segment0Direct
FAD-dependent thiol oxidase0Direct
TRASH domain0Direct
Transcription factor IIA (TFIIA), beta-barrel domain0Direct
Zn-finger domain of Sec23/240Direct
MPP-like0Direct
Alpha-adaptin ear subdomain-like0Direct
Sedlin (SEDL)0Direct
DLC0Direct
Variant RING domain0Direct
Nucleoplasmin-like core domain0Direct
Alanine racemase-like, N-terminal domain0Direct
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex0Direct
USP8 N-terminal domain-like0Direct
Ubiquitin carboxyl-terminal hydrolase UCH-L0Direct
CAT-like0Direct
Eukaryotic ODC-like0Direct
TATA-box binding protein (TBP), C-terminal domain0Direct
Tim10/DDP0Direct
Protein prenyltransferases0Direct
PAH2 domain0Direct
A20-like zinc finger0Direct
Ribosomal protein L18 and S110Direct
Pseudouridine synthase I TruA0Direct
BSD domain0Direct
Steroid-binding domain0Direct
Ran-binding domain0Direct
S-adenosylhomocystein hydrolase0Direct
Nop domain0Direct
LysM domain0Direct
Surp module (SWAP domain)0Direct
Transcription factor IIA (TFIIA), alpha-helical domain0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
XPF/Rad1/Mus81 nuclease0Direct
Clathrin adaptor appendage, alpha and beta chain-specific domain0Direct
Canonical RBD0.0000000000000278Direct
UBC-related0.0000006229Direct
Sm motif of small nuclear ribonucleoproteins, SNRNP0.000006736Direct
Cyclin0.0000415Direct
WD40-repeat0.0001196Direct
Cold shock DNA-binding domain-like0.0001645Direct
Tudor domain0.0007281Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PABC (PABP) domain0Direct
PLP-binding barrel0Direct
Surp module (SWAP domain)0Direct
LexA/Signal peptidase0Direct
Restriction endonuclease-like0Direct
Zn-finger domain of Sec23/240Direct
LuxS/MPP-like metallohydrolase0Direct
Nop domain0Direct
Mediator hinge subcomplex-like0Direct
Nucleoplasmin-like core domain0Direct
SIS domain0Direct
Myosin phosphatase inhibitor 17kDa protein, CPI-170Direct
TK C-terminal domain-like0Direct
Transcription factor IIA (TFIIA), beta-barrel domain0Direct
GINS helical bundle-like0Direct
LysM domain0Direct
USP8 N-terminal domain-like0Direct
DLC0Direct
Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex0Direct
Translational machinery components0Direct
BSD domain-like0Direct
Nucleoporin domain0Direct
The spindle assembly checkpoint protein mad20Direct
Transcription factor IIA (TFIIA), alpha-helical domain0Direct
PAH2 domain0Direct
RBP11-like subunits of RNA polymerase0Direct
Tim10-like0Direct
Cysteine alpha-hairpin motif0Direct
Ribosomal protein L10-like0Direct
Alanine racemase C-terminal domain-like0Direct
FAD-dependent thiol oxidase0Direct
PriA/YqbF domain0Direct
RNA-binding domain, RBD0.000000000000005879Direct
Nucleic acid-binding proteins0.000001129Direct
Sm-like ribonucleoproteins0.000002656Direct
ARM repeat0.00003302Direct
UBC-like0.00009753Direct
S-adenosyl-L-methionine-dependent methyltransferases0.0001378Direct
Cyclin-like0.0006694Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51206,51206
  • 51206 - cAMP-binding domain-like
  • 51206 - cAMP-binding domain-like
  • 0Direct
    54236,57889
  • 54236 - Ubiquitin-like
  • 57889 - Cysteine-rich domain
  • 0Direct
    63411,63411
  • 63411 - LuxS/MPP-like metallohydrolase
  • 63411 - LuxS/MPP-like metallohydrolase
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    52518,52922
  • 52518 - Thiamin diphosphate-binding fold (THDP-binding)
  • 52922 - TK C-terminal domain-like
  • 0Direct
    55945,55945
  • 55945 - TATA-box binding protein-like
  • 55945 - TATA-box binding protein-like
  • 0Direct
    51230,47005
  • 51230 - Single hybrid motif
  • 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
  • 0Direct
    47005,52777
  • 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
  • 52777 - CoA-dependent acyltransferases
  • 0Direct
    52540,46785
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0Direct
    48371,46785
  • 48371 - ARM repeat
  • 46785 - "Winged helix" DNA-binding domain
  • 0Direct
    82919,53300
  • 82919 - Zn-finger domain of Sec23/24
  • 53300 - vWA-like
  • 0Direct
    54928,54928
  • 54928 - RNA-binding domain, RBD
  • 54928 - RNA-binding domain, RBD
  • 0.000001069Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.000001547Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54791,54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0Direct
    54768,54768,54768
  • 54768 - dsRNA-binding domain-like
  • 54768 - dsRNA-binding domain-like
  • 54768 - dsRNA-binding domain-like
  • 0Direct
    50249,50249,50249
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 50249 - Nucleic acid-binding proteins
  • 0Direct
    90229,90229,90229
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 90229 - CCCH zinc finger
  • 0Direct
    51230,47005,52777
  • 51230 - Single hybrid motif
  • 47005 - Peripheral subunit-binding domain of 2-oxo acid dehydrogenase complex
  • 52777 - CoA-dependent acyltransferases
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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