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Xenopus ANatomical entity (XAN): skeletal system

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ 1:   musculoskeletal system [XAO:0000168] <2>(43|59) (45|26|15)
+ 1:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
0:   skeletal system [XAO:0003060] <3>(16|17) (17|7|4)
- 1:   cranium [XAO:0003075] <14>(5|9) (5|3|1)
- 1:   skeleton [XAO:0004053] <3>(12|9) (13|4|2)
- 1:   articular system [XAO:0004274] <1>(0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
F1F0 ATP synthase subunit C0Direct
Zn-binding ribosomal proteins0.0004986Direct
Actin depolymerizing proteins0.0006913Direct
Translation proteins SH3-like domain0.001065Inherited
Thioredoxin-like0.001566Inherited
LDH C-terminal domain-like0.002201Inherited
Spectrin repeat0.004791Inherited
Annexin0.005857Inherited
p53-like transcription factors0.02913Inherited
Homeodomain-like0.03981Inherited
HMG-box0.0572Inherited
Cytokine0.1919Inherited
HLH, helix-loop-helix DNA-binding domain0.3399Inherited
Cystine-knot cytokines0.9571Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
DJ-1/PfpI0Direct
RUNT domain0Direct
F1F0 ATP synthase subunit C0Direct
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
LIM domain0.0005407Direct
Lactate & malate dehydrogenases, C-terminal domain0.002279Inherited
Linker histone H1/H50.002279Inherited
LDH N-terminal domain-like0.002279Inherited
Glutathione peroxidase-like0.002936Inherited
Spectrin repeat0.00575Inherited
Homeodomain0.04574Inherited
Paired domain0.05011Inherited
Extracellular domain of cell surface receptors0.07032Inherited
HMG-box0.07489Inherited
Fibroblast growth factors (FGF)0.1621Inherited
Forkhead DNA-binding domain0.225Inherited
HLH, helix-loop-helix DNA-binding domain0.4276Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Mitochondrial cytochrome c oxidase subunit VIIa0Direct
F1F0 ATP synthase subunit C0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
Zn-binding ribosomal proteins0.0003732Direct
Actin depolymerizing proteins0.0005191Direct
Translation proteins SH3-like domain0.0008049Direct
Thioredoxin-like0.001191Inherited
LDH C-terminal domain-like0.001682Inherited
Spectrin repeat0.003692Inherited
Annexin0.004533Inherited
UBC-like0.01917Inherited
p53-like transcription factors0.02334Inherited
Homeodomain-like0.03234Inherited
HMG-box0.04703Inherited
Cytokine0.169Inherited
HLH, helix-loop-helix DNA-binding domain0.3099Inherited
Cystine-knot cytokines0.93Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0006973Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.001053Inherited
    46966,47473
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.001682Inherited
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0.001682Inherited
    51735,56327
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 56327 - LDH C-terminal domain-like
  • 0.001682Inherited
    48726,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 0.007247Inherited
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.9766Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57716,57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0005191Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.001033Inherited
    46966,46966,47473
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0.001682Inherited
    48726,56436,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0.007247Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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