SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): cranium

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + + 3:   anatomical region [XAO:0003186] <43>(373|484) (375|285|122)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   head region [XAO:0000040] <4>(178|247) (182|140|57)
+ + 2:   organism subdivision [XAO:0003013] <11>(378|498) (382|292|125)
+ + 2:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + 2:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + 2:   musculoskeletal system [XAO:0000168] <2>(43|60) (45|26|15)
+ 1:   anatomical cluster [XAO:0003160] <43>(93|139) (96|75|38)
+ 1:   head [XAO:0003024] <22>(178|246) (182|140|57)
+ 1:   skeletal system [XAO:0003060] <3>(16|17) (17|7|4)
0:   cranium [XAO:0003075] <14>(5|9) (5|3|1)
- 1:   chondrocranium [XAO:0003059] <25>(1|1) (1|0|0)
- 1:   splanchnocranium [XAO:0003176] <5>(3|6) (3|0|0)
- 1:   braincase and otic capsule skeleton [XAO:0003083] <1>(0|0) (0|0|0)
- 1:   ethmoid region [XAO:0005192] <1>(0|0) (0|0|0)
- 1:   lower jaw [XAO:0003084] <1>(2|2) (2|0|0)
- 1:   otic region [XAO:0003175] <1>(0|0) (0|1|0)
- 1:   dermatocranium [XAO:0003169](0|0) (0|0|0)
- 1:   neurocranium [XAO:0003170](1|1) (1|0|0)
- 1:   occipital region [XAO:0003173](0|0) (0|0|0)
- 1:   olfactory region [XAO:0003172](2|3) (2|0|0)
- 1:   orbital region [XAO:0003171](0|0) (0|0|0)
- 1:   sphenoid region [XAO:0003174](0|0) (0|0|0)
- 1:   tooth [XAO:0000431](0|0) (0|0|0)
- 1:   upper jaw [XAO:0003087](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.0000007953Direct
Cytokine0.0004801Direct
p53-like transcription factors0.001412Inherited
HMG-box0.005047Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
RUNT domain0Direct
Homeodomain0Direct
HLH, helix-loop-helix DNA-binding domain0.000001712Direct
Glutathione peroxidase-like0.00006448Direct
Forkhead DNA-binding domain0.0001275Direct
Paired domain0.0001462Direct
Fibroblast growth factors (FGF)0.0003457Direct
Extracellular domain of cell surface receptors0.0006792Direct
HMG-box0.006125Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.0000005602Direct
Cytokine0.0003592Direct
p53-like transcription factors0.001071Inherited
HMG-box0.003896Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48726,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 0.00003919Direct
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.0002809Direct
    57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.09898Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,56436,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0.00003919Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)