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Xenopus ANatomical entity (XAN): vestibuloauditory system

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + 2:   nervous system [XAO:0000177] <11>(134|200) (140|113|51)
+ + 2:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ 1:   sensory system [XAO:0003194] <5>(38|51) (43|25|10)
0:   vestibuloauditory system [XAO:0003195] <4>(17|21) (19|8|5)
- 1:   auditory apparatus [XAO:0000189] <5>(1|1) (1|1|1)
- 1:   vestibulocochlear nerve [XAO:0003095] <2>(1|1) (1|0|0)
- 1:   otic placode [XAO:0000223](5|3) (5|1|0)
- 1:   otic vesicle [XAO:0000006](10|14) (12|4|3)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
PLP-binding barrel0Direct
Alanine racemase C-terminal domain-like0Direct
PriA/YqbF domain0Direct
GINS helical bundle-like0Direct
BRK domain-like0.0001311Direct
Frizzled cysteine-rich domain0.00111Inherited
Homeodomain-like0.04298Inherited
HMG-box0.05103Inherited
SMAD MH1 domain0.05131Inherited
HLH, helix-loop-helix DNA-binding domain0.0716Inherited
Growth factor receptor domain0.09053Inherited
Spectrin repeat0.1278Inherited
Cytokine0.144Inherited
Sema domain0.6043Inherited
Plexin repeat0.7912Inherited
Intermediate filament protein, coiled coil region1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Alanine racemase-like, N-terminal domain0Direct
Synuclein0Direct
Eukaryotic ODC-like0Direct
L domain0.00001765Direct
Tandem AAA-ATPase domain0.00002226Direct
BRK domain-like0.0001357Direct
Link domain0.000369Direct
Frizzled cysteine-rich domain0.001058Inherited
ets domain0.006294Inherited
Hypoxia-inducible factor Hif2a, C-terminal domain0.02517Inherited
SMAD domain0.02517Inherited
SMAD MH1 domain0.04621Inherited
Homeodomain0.04622Inherited
HMG-box0.04996Inherited
HLH, helix-loop-helix DNA-binding domain0.07624Inherited
Spectrin repeat0.08299Inherited
P4 origin-binding domain-like0.08299Inherited
Fibroblast growth factors (FGF)0.1938Inherited
Sema domain0.5957Inherited
Plexin repeat0.7835Inherited
Intermediate filament protein, coiled coil region1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PriA/YqbF domain0Direct
PLP-binding barrel0Direct
Synuclein0Direct
Alanine racemase C-terminal domain-like0Direct
GINS helical bundle-like0Direct
BRK domain-like0.00009638Direct
Frizzled cysteine-rich domain0.0008397Direct
Cystine-knot cytokines0.01597Inherited
Homeodomain-like0.03504Inherited
HMG-box0.04185Inherited
SMAD MH1 domain0.04208Inherited
HLH, helix-loop-helix DNA-binding domain0.05942Inherited
Growth factor receptor domain0.07601Inherited
"Winged helix" DNA-binding domain0.09285Inherited
Spectrin repeat0.1102Inherited
Cytokine0.1249Inherited
Sema domain0.568Inherited
Plexin repeat0.7573Inherited
Intermediate filament protein, coiled coil region1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
56436,57535
  • 56436 - C-type lectin-like
  • 57535 - Complement control module/SCR domain
  • 0Direct
    48726,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    52058,57184
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0.00001157Direct
    57184,52058
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00001157Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.04065Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.06049Inherited
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.568Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,56436,56436
  • 48726 - Immunoglobulin
  • 56436 - C-type lectin-like
  • 56436 - C-type lectin-like
  • 0Direct
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    52058,57184,52058
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 0.00009638Direct
    46966,46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.03784Inherited
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.08354Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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