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Xenopus ANatomical entity (XAN): visual system

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + + 4:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + 2:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + 2:   nervous system [XAO:0000177] <11>(133|200) (140|113|51)
+ 1:   sensory system [XAO:0003194] <5>(38|51) (43|25|10)
0:   visual system [XAO:0003198] <5>(25|35) (28|16|7)
- 1:   eye [XAO:0000179] <16>(23|29) (25|14|6)
- 1:   optic vesicle [XAO:0000228] <4>(5|7) (6|2|1)
- 1:   Stirnorgan [XAO:0001012](0|0) (0|0|0)
- 1:   eye primordium [XAO:0000227](3|2) (3|1|0)
- 1:   pineal gland [XAO:0000160](1|2) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
14-3-3 protein0Direct
Hedgehog/DD-peptidase0Direct
Nop domain0Direct
Synuclein0Direct
GINS helical bundle-like0Direct
PriA/YqbF domain0Direct
Guanido kinase N-terminal domain0Direct
SMAD MH1 domain0.0001378Direct
PYP-like sensor domain (PAS domain)0.0001627Direct
Orange domain-like0.0002138Direct
Zn-binding ribosomal proteins0.0006016Direct
gamma-Crystallin-like0.01461Inherited
DNA-binding domain0.131Inherited
RNA-binding domain, RBD0.1374Inherited
HLH, helix-loop-helix DNA-binding domain0.2942Inherited
Fibronectin type III0.42Inherited
Cytokine0.4676Inherited
Galactose-binding domain-like0.4691Inherited
Voltage-gated potassium channels0.7097Inherited
Frizzled cysteine-rich domain0.8172Inherited
Intermediate filament protein, coiled coil region0.8449Inherited
HMG-box0.8937Inherited
"Winged helix" DNA-binding domain0.9116Inherited
POZ domain0.9803Inherited
Homeodomain-like1Inherited


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Arrestin/Vps26-like0Direct
Synuclein0Direct
Nop domain0Direct
14-3-3 protein0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, phosphatase domain0Direct
PAS domain of steroid receptor coactivator 1A, NCo-A10Direct
Noggin0Direct
Guanido kinase N-terminal domain0Direct
Guanido kinase catalytic domain0Direct
6-phosphofructo-2-kinase/fructose-2,6-bisphosphatase, kinase domain0Direct
Hedgehog (development protein), N-terminal signaling domain0Direct
SMAD domain0.00003351Direct
SMAD MH1 domain0.0001425Direct
Hairy Orange domain0.0002305Direct
P4 origin-binding domain-like0.0006036Direct
Extracellular domain of cell surface receptors0.0006036Direct
POU-specific domain0.01095Inherited
Crystallins/Ca-binding development proteins0.01512Inherited
Glutathione peroxidase-like0.02706Inherited
Arginine methyltransferase0.07449Inherited
Canonical RBD0.07958Inherited
HLH, helix-loop-helix DNA-binding domain0.2454Inherited
Fibronectin type III0.3689Inherited
Fibroblast growth factors (FGF)0.4493Inherited
I set domains0.5001Inherited
Voltage-gated potassium channels0.516Inherited
Higher-molecular-weight phosphotyrosine protein phosphatases0.6294Inherited
Tetramerization domain of potassium channels0.7197Inherited
Frizzled cysteine-rich domain0.7718Inherited
Intermediate filament protein, coiled coil region0.801Inherited
Forkhead DNA-binding domain0.8045Inherited
HMG-box0.847Inherited
Rhodopsin-like1Inherited
Sema domain1Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
GINS helical bundle-like0Direct
Synuclein0Direct
Hedgehog/DD-peptidase0Direct
14-3-3 protein0Direct
Guanido kinase N-terminal domain0Direct
Nop domain0Direct
PriA/YqbF domain0Direct
SMAD MH1 domain0.0001014Direct
PYP-like sensor domain (PAS domain)0.0001201Direct
Orange domain-like0.0001582Direct
Zn-binding ribosomal proteins0.0004514Direct
Phosphoglycerate mutase-like0.0009783Direct
gamma-Crystallin-like0.0115Inherited
DNA-binding domain0.1131Inherited
RNA-binding domain, RBD0.1192Inherited
HLH, helix-loop-helix DNA-binding domain0.2657Inherited
Fibronectin type III0.3869Inherited
F-box domain0.4026Inherited
Cytokine0.4327Inherited
Galactose-binding domain-like0.434Inherited
Voltage-gated potassium channels0.6734Inherited
Frizzled cysteine-rich domain0.7849Inherited
Immunoglobulin0.8036Inherited
Intermediate filament protein, coiled coil region0.8138Inherited
HMG-box0.8643Inherited
"Winged helix" DNA-binding domain0.8824Inherited
POZ domain0.9549Inherited
Homeodomain-like1Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    48034,55931
  • 48034 - Guanido kinase N-terminal domain
  • 55931 - Glutamine synthetase/guanido kinase
  • 0Direct
    52540,53254
  • 52540 - P-loop containing nucleoside triphosphate hydrolases
  • 53254 - Phosphoglycerate mutase-like
  • 0Direct
    57184,49265
  • 57184 - Growth factor receptor domain
  • 49265 - Fibronectin type III
  • 0Direct
    49899,48726
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 0Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.0001582Direct
    47459,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0004174Direct
    55785,55785
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0006168Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.004025Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.02348Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.1063Inherited
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.4632Inherited
    48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.5273Inherited
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.6863Inherited
    57850,49599
  • 57850 - RING/U-box
  • 49599 - TRAF domain-like
  • 0.8772Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 1Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,57184
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 57184 - Growth factor receptor domain
  • 0Direct
    49899,48726,49265
  • 49899 - Concanavalin A-like lectins/glucanases
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0Direct
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.00003897Direct
    47459,55785,55785
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 55785 - PYP-like sensor domain (PAS domain)
  • 55785 - PYP-like sensor domain (PAS domain)
  • 0.0001582Direct
    48726,49265,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.0224Inherited
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.02925Inherited
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.6863Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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