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Xenopus ANatomical entity (XAN): neural tube

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + 3:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + 3:   Xenopus anatomical entity [XAO:0000000] <9>
+ + 2:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + 2:   nervous system [XAO:0000177] <11>(133|200) (140|113|51)
+ + 2:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ 1:   embryonic structure [XAO:0003042] <57>(42|55) (44|26|12)
+ 1:   central nervous system [XAO:0000215] <7>(128|190) (132|108|47)
0:   neural tube [XAO:0003204] <7>(7|13) (8|2|2)
- 1:   neurenteric canal [XAO:0005245] <1>(1|1) (1|0|0)
- 1:   anterior neural tube [XAO:0000307](1|2) (1|0|0)
- 1:   chordoneural hinge [XAO:0000108](4|5) (4|1|1)
- 1:   dorsolateral neural tube [XAO:0004617](0|0) (0|0|0)
- 1:   posterior neural tube [XAO:0000250](1|2) (1|1|0)
- 1:   sulcus limitans of neural tube [XAO:0005070](0|0) (0|0|0)
- 1:   ventrolateral neural tube [XAO:0004616](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.000000000006354Direct
Cytokine0.00000003391Direct
"Winged helix" DNA-binding domain0.000002071Direct
Orange domain-like0.00002269Direct
Cystine-knot cytokines0.0001442Direct
Frizzled cysteine-rich domain0.0001864Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0Direct
Noggin0Direct
HLH, helix-loop-helix DNA-binding domain0.00000000003169Direct
Fibroblast growth factors (FGF)0.00000001195Direct
Hairy Orange domain0.00002589Direct
P4 origin-binding domain-like0.00002727Direct
VWC domain0.0001026Direct
Paired domain0.000105Direct
Forkhead DNA-binding domain0.0001841Direct
Frizzled cysteine-rich domain0.0002438Direct
POU-specific domain0.0006797Direct
Extracellular domain of cell surface receptors0.0009883Direct
Cell cycle control phosphatase, catalytic domain0.0009883Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.000000000004386Direct
Cytokine0.00000002365Direct
"Winged helix" DNA-binding domain0.000001467Direct
Orange domain-like0.00001639Direct
Cystine-knot cytokines0.0001062Direct
Frizzled cysteine-rich domain0.0001378Direct
FnI-like domain0.0007748Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.00001639Direct
    47954,47954
  • 47954 - Cyclin-like
  • 47954 - Cyclin-like
  • 0.01004Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57603,57603,57603
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 57603 - FnI-like domain
  • 0.000169Direct
    48371,48371,48371
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 48371 - ARM repeat
  • 0.02128Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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