SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): retinal neural layer

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + 6:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + + + 5:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + + + 5:   anatomical region [XAO:0003186] <43>(373|484) (375|285|122)
+ + + + 4:   sensory system [XAO:0003194] <5>(38|51) (43|25|10)
+ + + + 4:   compound organ [XAO:0003041] <8>(334|444) (336|276|123)
+ + + + 4:   head region [XAO:0000040] <4>(178|247) (182|140|57)
+ + + + 4:   organism subdivision [XAO:0003013] <11>(378|498) (382|292|125)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   nervous system [XAO:0000177] <11>(133|200) (140|113|51)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   head [XAO:0003024] <22>(178|246) (182|140|57)
+ + + 3:   central nervous system [XAO:0000215] <7>(128|190) (132|108|47)
+ + + 3:   visual system [XAO:0003198] <5>(25|35) (28|16|7)
+ + + 3:   cavitated compound organ [XAO:0003165] <23>(286|393) (290|248|112)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   eye [XAO:0000179] <16>(23|29) (25|14|6)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   multi-tissue structure [XAO:0003037] <130>(48|62) (51|32|14)
+ 1:   retina [XAO:0000009] <6>(9|15) (10|9|2)
0:   retinal neural layer [XAO:0003216] <12>(5|11) (6|6|2)
- 1:   photoreceptor layer [XAO:0003215] <1>(0|2) (1|0|0)
- 1:   retinal ganglion cell layer [XAO:0003223] <1>(5|8) (5|4|1)
- 1:   amacrine cell [XAO:0004099](0|0) (0|0|0)
- 1:   bipolar neuron [XAO:0004098](0|0) (0|0|0)
- 1:   horizontal cell [XAO:0004097](0|0) (0|0|0)
- 1:   inner limiting membrane [XAO:0003222](0|0) (0|0|0)
- 1:   optic fiber layer [XAO:0003220](0|0) (0|0|0)
- 1:   outer limiting membrane [XAO:0003224](0|0) (0|0|0)
- 1:   retinal inner nuclear layer [XAO:0003221](4|6) (5|5|1)
- 1:   retinal inner plexiform layer [XAO:0003225](3|3) (3|0|0)
- 1:   retinal outer nuclear layer [XAO:0003219](1|1) (1|0|0)
- 1:   retinal outer plexiform layer [XAO:0003218](0|1) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Voltage-gated potassium channels0.0003791Direct
Fibronectin type III0.0006377Direct
Intermediate filament protein, coiled coil region0.001312Inherited
HLH, helix-loop-helix DNA-binding domain0.4646Inherited
Homeodomain-like0.4985Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Arrestin/Vps26-like0Direct
Fibronectin type III0.0005263Direct
Intermediate filament protein, coiled coil region0.001067Inherited
Voltage-gated potassium channels0.002776Inherited
Tetramerization domain of potassium channels0.005945Inherited
Rhodopsin-like0.007093Inherited
POU-specific domain0.01205Inherited
Higher-molecular-weight phosphotyrosine protein phosphatases0.01205Inherited
I set domains0.03447Inherited
HLH, helix-loop-helix DNA-binding domain0.4412Inherited
Homeodomain0.5822Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Voltage-gated potassium channels0.0002828Direct
Fibronectin type III0.0004785Direct
Intermediate filament protein, coiled coil region0.0009949Direct
Immunoglobulin0.2185Inherited
HLH, helix-loop-helix DNA-binding domain0.4298Inherited
Homeodomain-like0.4631Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0005854Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.000928Direct
    49265,49265
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0.002398Inherited
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.00614Inherited
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.1697Inherited
    57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.2456Inherited

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57196,57196,49899
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0.00002446Direct
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.002813Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)