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Xenopus ANatomical entity (XAN): retinal ganglion cell layer

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + + + + 6:   anatomical region [XAO:0003186] <43>(373|484) (375|285|122)
+ + + + + + 6:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + + + 5:   head region [XAO:0000040] <4>(178|247) (182|140|57)
+ + + + + 5:   nervous system [XAO:0000177] <11>(133|200) (140|113|51)
+ + + + + 5:   organism subdivision [XAO:0003013] <11>(378|498) (382|292|125)
+ + + + + 5:   sensory system [XAO:0003194] <5>(38|51) (43|25|10)
+ + + + + 5:   compound organ [XAO:0003041] <8>(334|444) (336|276|123)
+ + + + 4:   central nervous system [XAO:0000215] <7>(128|190) (132|108|47)
+ + + + 4:   head [XAO:0003024] <22>(178|246) (182|140|57)
+ + + + 4:   visual system [XAO:0003198] <5>(25|35) (28|16|7)
+ + + + 4:   cavitated compound organ [XAO:0003165] <23>(286|393) (290|248|112)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   eye [XAO:0000179] <16>(23|29) (25|14|6)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   retina [XAO:0000009] <6>(9|15) (10|9|2)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + 2:   multi-tissue structure [XAO:0003037] <130>(48|62) (51|32|14)
+ 1:   retinal neural layer [XAO:0003216] <12>(5|11) (6|6|2)
+ 1:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
0:   retinal ganglion cell layer [XAO:0003223] <1>(5|8) (5|4|1)
- 1:   retinal ganglion cell [XAO:0004100](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Intermediate filament protein, coiled coil region0.0000000029Direct
Voltage-gated potassium channels0.0001066Direct
Fibronectin type III0.0001531Direct
Homeodomain-like0.0002451Direct
HLH, helix-loop-helix DNA-binding domain0.0005069Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Intermediate filament protein, coiled coil region0.000000004223Direct
I set domains0.00001392Direct
Homeodomain0.0001547Direct
Fibronectin type III0.0001931Direct
Tetramerization domain of potassium channels0.0003373Direct
POU-specific domain0.0005143Direct
HLH, helix-loop-helix DNA-binding domain0.0005761Direct
Higher-molecular-weight phosphotyrosine protein phosphatases0.0006537Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Intermediate filament protein, coiled coil region0.000000002014Direct
Voltage-gated potassium channels0.00007823Direct
Fibronectin type III0.0001129Direct
Homeodomain-like0.0001817Direct
HLH, helix-loop-helix DNA-binding domain0.0003795Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48726,49265
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0000002245Direct
    52799,52799
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 52799 - (Phosphotyrosine protein) phosphatases II
  • 0.000004538Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0004135Direct
    48726,48726
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 0.0008427Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,48726,49265
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 49265 - Fibronectin type III
  • 0.0000007457Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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