SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus ANatomical entity (XAN): anatomical line

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ 1:   Xenopus anatomical entity [XAO:0000000] <9>
0:   anatomical line [XAO:0004003] <4>(6|5) (6|2|1)
- 1:   anatomical axis [XAO:0005200] <5>(0|0) (0|0|0)
- 1:   midbrain-hindbrain boundary [XAO:0000016] <1>(4|5) (4|1|1)
- 1:   archenteron roof midline [XAO:0005155](0|0) (0|0|0)
- 1:   forebrain-midbrain boundary [XAO:0005027](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.000000002591Direct
HMG-box0.000006151Direct
GINS helical bundle-like0.000007967Direct
Frizzled cysteine-rich domain0.00001552Direct
Sema domain0.0006313Direct
HLH, helix-loop-helix DNA-binding domain0.0008736Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.00000004406Direct
HMG-box0.000008058Direct
Paired domain0.00001373Direct
Frizzled cysteine-rich domain0.00001749Direct
Sema domain0.0003067Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.000000001819Direct
HMG-box0.000004429Direct
GINS helical bundle-like0.000005752Direct
Frizzled cysteine-rich domain0.00001126Direct
Sema domain0.0004773Direct
HLH, helix-loop-helix DNA-binding domain0.0006631Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
103575,48726
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0001766Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 0.0004773Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    101912,103575,48726
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 48726 - Immunoglobulin
  • 0.0001766Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)