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Xenopus ANatomical entity (XAN): neural fold

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + 5:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + + + 4:   primary germ layer [XAO:0003011] <4>(107|154) (108|70|28)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   ectoderm [XAO:0000001] <15>(61|84) (61|41|10)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + 2:   neuroectoderm [XAO:0000042] <9>(25|29) (26|13|4)
+ 1:   neural plate [XAO:0000249] <10>(18|18) (18|7|2)
+ 1:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
0:   neural fold [XAO:0004087] <2>(7|11) (8|3|1)
- 1:   anterior neural fold [XAO:0000310](5|9) (5|2|0)
- 1:   posterior neural fold [XAO:0005242](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.00000005687Direct
Frizzled cysteine-rich domain0.000003062Direct
HMG-box0.000008506Direct
Orange domain-like0.0002374Direct
lambda repressor-like DNA-binding domains0.0002513Direct
beta-beta-alpha zinc fingers0.0005941Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Noggin0Direct
Homeodomain5.633e-16Direct
HLH, helix-loop-helix DNA-binding domain0.0000001275Direct
Classic zinc finger, C2H20.000003088Direct
Paired domain0.00000364Direct
Frizzled cysteine-rich domain0.000003812Direct
HMG-box0.00001232Direct
POU-specific domain0.00004972Direct
Forkhead DNA-binding domain0.00006637Direct
Hairy Orange domain0.000248Direct
ets domain0.0009215Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0Direct
HLH, helix-loop-helix DNA-binding domain0.00000003971Direct
Frizzled cysteine-rich domain0.000002175Direct
HMG-box0.000006088Direct
Orange domain-like0.000176Direct
lambda repressor-like DNA-binding domains0.0001863Direct
beta-beta-alpha zinc fingers0.0004455Direct
"Winged helix" DNA-binding domain0.0009643Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57667,57667
  • 57667 - beta-beta-alpha zinc fingers
  • 57667 - beta-beta-alpha zinc fingers
  • 0.00001087Direct
    47459,158457
  • 47459 - HLH, helix-loop-helix DNA-binding domain
  • 158457 - Orange domain-like
  • 0.000176Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0006089Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    50044,55550,56112
  • 50044 - SH3-domain
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.0000831Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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