SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): pronephric tubule

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + + + + 7:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + + + + + 6:   anatomical region [XAO:0003186] <43>(373|484) (375|285|122)
+ + + + + + 6:   compound organ [XAO:0003041] <8>(334|444) (336|276|123)
+ + + + + + 6:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + + + + 6:   urogenital system [XAO:0000140] <7>(118|173) (119|93|47)
+ + + + + 5:   urinary system [XAO:0000143] <5>(17|22) (17|7|5)
+ + + + + 5:   organism subdivision [XAO:0003013] <11>(378|498) (382|292|125)
+ + + + + 5:   cavitated compound organ [XAO:0003165] <23>(286|393) (290|248|112)
+ + + + + 5:   trunk region [XAO:0000054] <1>(216|301) (216|156|81)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   trunk [XAO:0003025] <10>(215|300) (215|156|81)
+ + + + 4:   anatomical space [XAO:0003190] <22>(17|22) (18|9|5)
+ + + + 4:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + + + 4:   kidney [XAO:0003267] <2>(14|20) (14|6|5)
+ + + 3:   coelom [XAO:0004521] <1>(12|16) (12|5|4)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   embryonic kidney [XAO:0005243] <1>(11|14) (11|5|4)
+ + 2:   pronephric kidney [XAO:0002000] <5>(8|11) (8|4|2)
+ + 2:   multi-tissue structure [XAO:0003037] <130>(48|62) (51|32|14)
+ + 2:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ 1:   pronephric nephron [XAO:0000285] <1>(6|6) (6|2|0)
+ 1:   tissue [XAO:0003040] <184>(180|249) (186|128|57)
0:   pronephric tubule [XAO:0004105] <2>(6|6) (6|2|0)
- 1:   proximal tubule [XAO:0004518] <3>(5|3) (5|0|0)
- 1:   distal tubule [XAO:0004519] <2>(3|4) (3|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain-like0.00000000003418Direct
lambda repressor-like DNA-binding domains0.0001939Direct
ARID-like0.0007265Direct
Thioredoxin-like0.01928Inherited
Clavaminate synthase-like0.03653Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.06157Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Homeodomain0.00000000001272Direct
Glutathione peroxidase-like0.000001188Direct
POU-specific domain0.00003819Direct
Hypoxia-inducible factor Hif2a, C-terminal domain0.0003537Direct
ARID domain0.0005647Direct
Transforming growth factor (TGF)-beta0.02142Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Homeodomain-like0.00000000002364Direct
lambda repressor-like DNA-binding domains0.0001434Direct
ARID-like0.0005458Direct
Thioredoxin-like0.01525Inherited
Clavaminate synthase-like0.02952Inherited
Glucocorticoid receptor-like (DNA-binding domain)0.05078Inherited

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0008263Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)