SUPERFAMILY 1.75 HMM library and genome assignments server

Superfamily is undergoing a server migration - you are now browsing on the new server. Please contact us if you experience any problems.

Xenopus ANatomical entity (XAN): neural nucleus

(show info)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + 3:   anatomical system [XAO:0003002] <19>(239|330) (246|188|86)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   anatomical group [XAO:0003001] <2>(374|481) (379|294|130)
+ + 2:   nervous system [XAO:0000177] <11>(134|200) (140|113|51)
+ 1:   anatomical cluster [XAO:0003160] <43>(93|139) (97|75|38)
+ 1:   central nervous system [XAO:0000215] <7>(129|190) (132|108|47)
0:   neural nucleus [XAO:0004609] <34>(4|4) (4|1|0)
- 1:   nucleus of the solitary tract [XAO:0005048] <1>(0|0) (0|0|0)
- 1:   anterior amygdala [XAO:0004532](0|0) (0|0|0)
- 1:   anterior entopeduncular nucleus [XAO:0004534](0|0) (0|0|0)
- 1:   anterior thalamic nucleus [XAO:0004536](0|1) (0|1|0)
- 1:   anterodorsal tegmental nucleus [XAO:0004537](0|0) (0|0|0)
- 1:   anteroventral tegmental nucleus [XAO:0004538](0|0) (0|0|0)
- 1:   bed nucleus of the stria terminalis [XAO:0004541](0|2) (0|1|0)
- 1:   central amygdala [XAO:0004542](0|0) (0|0|0)
- 1:   central nucleus of the thalamus [XAO:0004544](0|1) (1|1|0)
- 1:   dorsal column nucleus [XAO:0004545](0|0) (0|0|0)
- 1:   dorsal habenular nucleus [XAO:0004546](0|0) (0|0|0)
- 1:   isthmic nucleus [XAO:0004557](0|0) (0|0|0)
- 1:   lateral amygdala [XAO:0004558](0|0) (0|0|0)
- 1:   lateral hypothalamic nucleus [XAO:0004562](0|0) (0|0|0)
- 1:   laterodorsal tegmental nucleus [XAO:0004565](0|0) (0|0|0)
- 1:   locus coeruleus [XAO:0004566](0|0) (0|0|0)
- 1:   magnocellular preoptic nucleus [XAO:0004567](0|0) (0|0|0)
- 1:   medial amygdala [XAO:0004568](1|2) (1|1|0)
- 1:   nucleus accumbens [XAO:0004575](0|0) (0|0|0)
- 1:   nucleus of the diagonal band [XAO:0004576](0|0) (0|0|0)
- 1:   nucleus reticularis inferior [XAO:0005054](0|0) (1|0|0)
- 1:   nucleus reticularis medialis [XAO:0005052](0|0) (0|0|0)
- 1:   nucleus reticularis superior [XAO:0005053](0|0) (0|0|0)
- 1:   oculomotor motornucleus [XAO:0004389](0|0) (0|0|0)
- 1:   parabrachial area [XAO:0005050](0|0) (0|0|0)
- 1:   posterodorsal tegmental nucleus [XAO:0004581](0|0) (0|0|0)
- 1:   posteroventral tegmental nucleus [XAO:0004582](0|0) (0|0|0)
- 1:   subthalamic nucleus [XAO:0004589](0|0) (0|0|0)
- 1:   suprachiasmatic nucleus [XAO:0004072](0|0) (0|0|0)
- 1:   supraoptoparaventricular region [XAO:0005056](0|0) (0|0|0)
- 1:   ventral habenular nucleus [XAO:0004591](0|0) (0|0|0)
- 1:   ventral hypothalamic nucleus [XAO:0004592](0|0) (0|0|0)
- 1:   ventrolateral thalamic nucleus [XAO:0004595](1|1) (1|0|0)
- 1:   ventromedial thalamic nucleus [XAO:0004596](0|0) (0|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Glucocorticoid receptor-like (DNA-binding domain)0.00000002136Direct
Intermediate filament protein, coiled coil region0.00000006751Direct
Family A G protein-coupled receptor-like0.000001579Direct
Homeodomain-like0.000003001Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

(show details)
SCOP termFDR (all)Annotation (direct or inherited)
Intermediate filament protein, coiled coil region0.00000009973Direct
Rhodopsin-like0.0000008938Direct
Homeodomain0.000001086Direct
LIM domain0.00009064Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
Plot tree as:   Download Newick format tree:
(show help)

Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

(show details)
Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Glucocorticoid receptor-like (DNA-binding domain)0.00000001489Direct
Intermediate filament protein, coiled coil region0.00000004717Direct
Family A G protein-coupled receptor-like0.000001117Direct
Homeodomain-like0.000002132Direct

(show details)
Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
57716,57716
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 57716 - Glucocorticoid receptor-like (DNA-binding domain)
  • 0.000000009386Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)