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Xenopus ANatomical entity (XAN): neurogenic placode

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   Xenopus anatomical entity [XAO:0000000] <9>
+ + + + 4:   multicellular anatomical structure [XAO:0005002] <4>(437|563) (439|323|141)
+ + + 3:   anatomical structure [XAO:0003000] <11>(575|729) (575|396|161)
+ + + 3:   embryo [XAO:0000113] <8>(133|186) (135|86|36)
+ + + 3:   tissue [XAO:0003040] <184>(180|248) (186|128|57)
+ + + 3:   primary germ layer [XAO:0003011] <4>(107|153) (108|70|28)
+ + + 3:   whole organism [XAO:0003004] <12>(450|576) (454|327|143)
+ + 2:   neuroectoderm [XAO:0000042] <9>(25|29) (26|14|4)
+ + 2:   ectoderm [XAO:0000001] <15>(61|84) (61|42|10)
+ + 2:   embryonic structure [XAO:0003042] <57>(42|55) (44|27|12)
+ 1:   cranial placode [XAO:0000305] <1>(15|15) (15|6|1)
0:   neurogenic placode [XAO:0004620] <8>(12|12) (12|3|0)
- 1:   lateral line placode [XAO:0000440] <5>(0|0) (0|0|0)
- 1:   epibranchial placode [XAO:0000284] <3>(0|1) (1|0|0)
- 1:   adenohypophyseal placode [XAO:0004208](0|0) (0|0|0)
- 1:   lens placode [XAO:0000240](1|0) (1|0|0)
- 1:   olfactory placode [XAO:0000005](0|0) (0|0|0)
- 1:   otic placode [XAO:0000223](5|3) (5|1|0)
- 1:   profundal placode [XAO:0004093](1|1) (1|0|0)
- 1:   trigeminal placode [XAO:0000225](0|0) (0|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
PriA/YqbF domain0Direct
GINS helical bundle-like0Direct
Cytokine0.000005278Direct
p53-like transcription factors0.00005008Direct
Frizzled cysteine-rich domain0.00007411Direct
Cystine-knot cytokines0.0001671Direct
lambda repressor-like DNA-binding domains0.0004646Direct
HMG-box0.0009309Direct
Homeodomain-like0.3612Inherited
Sema domain1Inherited
Plexin repeat1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Synuclein0Direct
Fibroblast growth factors (FGF)0.000003397Direct
P4 origin-binding domain-like0.00003165Direct
Transforming growth factor (TGF)-beta0.00005873Direct
Frizzled cysteine-rich domain0.0000942Direct
Paired domain0.0002525Direct
POU-specific domain0.0003958Direct
T-box0.0006439Direct
HMG-box0.001274Inherited
Homeodomain0.4856Inherited
Sema domain1Inherited
Plexin repeat1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
PriA/YqbF domain0Direct
Synuclein0Direct
GINS helical bundle-like0Direct
Cytokine0.000003761Direct
p53-like transcription factors0.00003646Direct
Frizzled cysteine-rich domain0.00005419Direct
Cystine-knot cytokines0.0001233Direct
lambda repressor-like DNA-binding domains0.0003476Direct
HMG-box0.0007022Direct
Homeodomain-like0.3306Inherited
Plexin repeat1Inherited
Sema domain1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
47413,46689
  • 47413 - lambda repressor-like DNA-binding domains
  • 46689 - Homeodomain-like
  • 0.0006629Direct
    54791,54791
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 54791 - Eukaryotic type KH-domain (KH-domain type I)
  • 0.000991Direct
    101912,103575
  • 101912 - Sema domain
  • 103575 - Plexin repeat
  • 1Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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