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Xenopus DEvelopment stage (XDE): tailbud stage

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Xenopus developmental stage [XAO:1000000] <6>
+ 1:   embryonic stage [XAO:1000012] <6>(40|57) (41|42|16)
0:   tailbud stage [XAO:1000007] <2>(18|16) (18|14|5)
- 1:   late tailbud stage [XAO:1000080] <12>(14|14) (14|10|3)
- 1:   early tailbud stage [XAO:1000002] <7>(4|2) (4|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Cation efflux protein cytoplasmic domain-like0Direct
MAST3 pre-PK domain-like0Direct
SpoIIaa-like0.0005247Direct
Periplasmic binding protein-like II0.04397Inherited
gamma-Crystallin-like0.06697Inherited
cAMP-binding domain-like0.1055Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.1827Inherited
Nicotinic receptor ligand binding domain-like0.1827Inherited
L domain-like0.3766Inherited
Periplasmic binding protein-like I0.4832Inherited
SRCR-like0.5486Inherited
PLC-like phosphodiesterases0.5637Inherited
Cytokine0.6434Inherited
beta-beta-alpha zinc fingers0.8614Inherited
Nuclear receptor ligand-binding domain0.9318Inherited
E set domains0.9778Inherited
EGF/Laminin1Inherited
Homeodomain-like1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
MAST3 pre-PK domain-like0Direct
THAP domain0.01056Inherited
Crystallins/Ca-binding development proteins0.05108Inherited
Phosphate binding protein-like0.0787Inherited
Nicotinic receptor ligand binding domain-like0.1491Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.1491Inherited
Ngr ectodomain-like0.2836Inherited
Pleckstrin-homology domain (PH domain)0.2939Inherited
Cadherin0.3013Inherited
Forkhead DNA-binding domain0.3362Inherited
L-arabinose binding protein-like0.5055Inherited
Fibroblast growth factors (FGF)0.592Inherited
PLC-like (P variant)0.5991Inherited
Mammalian PLC0.6406Inherited
Nuclear receptor ligand-binding domain0.898Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cation efflux protein cytoplasmic domain-like0Direct
MAST3 pre-PK domain-like0Direct
SpoIIaa-like0.0003559Direct
Periplasmic binding protein-like II0.03349Inherited
gamma-Crystallin-like0.05235Inherited
cAMP-binding domain-like0.08582Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.1562Inherited
Nicotinic receptor ligand binding domain-like0.1562Inherited
L domain-like0.3328Inherited
Periplasmic binding protein-like I0.435Inherited
SRCR-like0.4997Inherited
PLC-like phosphodiesterases0.5151Inherited
Cytokine0.5981Inherited
beta-beta-alpha zinc fingers0.8278Inherited
Nuclear receptor ligand-binding domain0.9079Inherited
E set domains0.9632Inherited
EGF/Laminin1Inherited
Homeodomain-like1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48350,50729
  • 48350 - GTPase activation domain, GAP
  • 50729 - PH domain-like
  • 0Direct
    50044,47769
  • 50044 - SH3-domain
  • 47769 - SAM/Pointed domain
  • 0Direct
    48371,101447
  • 48371 - ARM repeat
  • 101447 - Formin homology 2 domain (FH2 domain)
  • 0Direct
    48726,82895
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    117839,117839
  • 117839 - WWE domain
  • 117839 - WWE domain
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    46689,57667
  • 46689 - Homeodomain-like
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    161111,160240
  • 161111 - Cation efflux protein transmembrane domain-like
  • 160240 - Cation efflux protein cytoplasmic domain-like
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.1562Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.2437Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.3626Inherited
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0.6457Inherited
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.6457Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    48726,48726,82895
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    48726,82895,82895
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.4099Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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