SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus DEvelopment stage (XDE): tailbud stage

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + 2:   Xenopus developmental stage [XAO:1000000] <6>
+ 1:   embryonic stage [XAO:1000012] <6>(41|60) (43|44|18)
0:   tailbud stage [XAO:1000007] <2>(19|17) (19|16|6)
- 1:   late tailbud stage [XAO:1000080] <12>(15|14) (15|11|4)
- 1:   early tailbud stage [XAO:1000002] <7>(4|2) (4|0|0)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Cation efflux protein cytoplasmic domain-like0Direct
MAST3 pre-PK domain-like0Direct
SpoIIaa-like0.0005336Direct
Periplasmic binding protein-like II0.04408Inherited
gamma-Crystallin-like0.1002Inherited
cAMP-binding domain-like0.1062Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.1842Inherited
Nicotinic receptor ligand binding domain-like0.1842Inherited
Cadherin-like0.3975Inherited
Periplasmic binding protein-like I0.4119Inherited
L domain-like0.4285Inherited
SRCR-like0.4304Inherited
PLC-like phosphodiesterases0.5629Inherited
Cytokine0.6437Inherited
beta-beta-alpha zinc fingers0.8659Inherited
Nuclear receptor ligand-binding domain0.9328Inherited
E set domains0.9789Inherited
Homeodomain-like1Inherited
EGF/Laminin1Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
Scavenger receptor cysteine-rich (SRCR) domain0Direct
MAST3 pre-PK domain-like0Direct
THAP domain0.01066Inherited
Crystallins/Ca-binding development proteins0.07921Inherited
Phosphate binding protein-like0.07921Inherited
ABC transporter transmembrane region0.1179Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.151Inherited
Nicotinic receptor ligand binding domain-like0.151Inherited
Ngr ectodomain-like0.2477Inherited
Cadherin0.2626Inherited
Forkhead DNA-binding domain0.3362Inherited
L-arabinose binding protein-like0.4252Inherited
Fibroblast growth factors (FGF)0.5927Inherited
PLC-like (P variant)0.5999Inherited
Mammalian PLC0.6405Inherited
Nuclear receptor ligand-binding domain0.8976Inherited
Homeodomain1Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
MAST3 pre-PK domain-like0Direct
Cation efflux protein cytoplasmic domain-like0Direct
SpoIIaa-like0.0003613Direct
Periplasmic binding protein-like II0.03358Inherited
gamma-Crystallin-like0.08085Inherited
cAMP-binding domain-like0.08634Inherited
Nicotinic receptor ligand binding domain-like0.157Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.157Inherited
Cadherin-like0.3523Inherited
Periplasmic binding protein-like I0.3656Inherited
L domain-like0.3813Inherited
SRCR-like0.3828Inherited
PLC-like phosphodiesterases0.5151Inherited
Cytokine0.5986Inherited
beta-beta-alpha zinc fingers0.8326Inherited
Nuclear receptor ligand-binding domain0.9088Inherited
E set domains0.9637Inherited
EGF/Laminin1Inherited
Homeodomain-like1Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
46689,57667
  • 46689 - Homeodomain-like
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    48371,101447
  • 48371 - ARM repeat
  • 101447 - Formin homology 2 domain (FH2 domain)
  • 0Direct
    56487,56487
  • 56487 - SRCR-like
  • 56487 - SRCR-like
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    117839,117839
  • 117839 - WWE domain
  • 117839 - WWE domain
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    50044,47769
  • 50044 - SH3-domain
  • 47769 - SAM/Pointed domain
  • 0Direct
    48726,82895
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    47576,48065
  • 47576 - Calponin-homology domain, CH-domain
  • 48065 - DBL homology domain (DH-domain)
  • 0Direct
    48350,50729
  • 48350 - GTPase activation domain, GAP
  • 50729 - PH domain-like
  • 0Direct
    161111,160240
  • 161111 - Cation efflux protein transmembrane domain-like
  • 160240 - Cation efflux protein cytoplasmic domain-like
  • 0Direct
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.157Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.2452Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.314Inherited
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0.6454Inherited
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.6454Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    48726,48726,82895
  • 48726 - Immunoglobulin
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    47576,48065,50729
  • 47576 - Calponin-homology domain, CH-domain
  • 48065 - DBL homology domain (DH-domain)
  • 50729 - PH domain-like
  • 0Direct
    48726,82895,82895
  • 48726 - Immunoglobulin
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.4112Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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