SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus DEvelopment stage (XDE): NF stage 35 and 36

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   embryonic stage [XAO:1000012] <6>(40|57) (41|42|16)
+ + 2:   tailbud stage [XAO:1000007] <2>(18|16) (18|14|5)
+ + 2:   Xenopus developmental stage [XAO:1000000] <6>
+ 1:   late tailbud stage [XAO:1000080] <12>(14|14) (14|10|3)
+ 1:   NF stage [XAO:1000094] <68>(432|574) (432|325|138)
0:   NF stage 35 and 36 [XAO:1000049](6|5) (6|2|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Neurotransmitter-gated ion-channel transmembrane pore0.00001207Direct
Nicotinic receptor ligand binding domain-like0.00001207Direct
Periplasmic binding protein-like I0.0002735Direct
EGF/Laminin0.0004639Direct
Periplasmic binding protein-like II0.0005521Direct
SpoIIaa-like0.0008782Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Nicotinic receptor ligand binding domain-like0.000007937Direct
Neurotransmitter-gated ion-channel transmembrane pore0.000007937Direct
Phosphate binding protein-like0.00008314Direct
L-arabinose binding protein-like0.00008481Direct
Cadherin0.0009095Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Neurotransmitter-gated ion-channel transmembrane pore0.000008013Direct
Nicotinic receptor ligand binding domain-like0.000008013Direct
Periplasmic binding protein-like I0.0001836Direct
EGF/Laminin0.0003134Direct
Periplasmic binding protein-like II0.0003749Direct
SpoIIaa-like0.0005996Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.000008013Direct
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.0007784Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.000654Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
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