SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus DEvelopment stage (XDE): NF stage 45

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   post-embryonic stage [XAO:1000095] <3>(124|170) (125|89|39)
+ + 2:   Xenopus developmental stage [XAO:1000000] <6>
+ + 2:   tadpole stage [XAO:1000008] <2>(117|162) (118|85|36)
+ 1:   premetamorphosis stage [XAO:1000089] <10>(6|7) (6|3|1)
+ 1:   NF stage [XAO:1000094] <68>(432|574) (432|325|138)
0:   NF stage 45 [XAO:1000057](2|2) (2|3|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
TSP-1 type 1 repeat0Direct
Metalloproteases ("zincins"), catalytic domain0.00000000001988Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
TSP-1 type 1 repeat0Direct
Reprolysin-like0Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
TSP-1 type 1 repeat0Direct
Metalloproteases ("zincins"), catalytic domain0.00000000001308Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55486,82895
  • 55486 - Metalloproteases ("zincins"), catalytic domain
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0Direct
    48403,48403
  • 48403 - Ankyrin repeat
  • 48403 - Ankyrin repeat
  • 0.0008642Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    82895,82895,82895
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 82895 - TSP-1 type 1 repeat
  • 0.000000000005267Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
    (show help)