SUPERFAMILY 1.75 HMM library and genome assignments server

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Xenopus DEvelopment stage (XDE): NF stage 62

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   post-embryonic stage [XAO:1000095] <3>(124|168) (126|89|39)
+ + + 3:   tadpole stage [XAO:1000008] <2>(117|160) (119|85|36)
+ + 2:   Xenopus developmental stage [XAO:1000000] <6>
+ + 2:   metamorphosing tadpole stage [XAO:1000079] <2>(98|138) (100|75|32)
+ 1:   climax stage [XAO:1000091] <9>(80|118) (81|65|29)
+ 1:   NF stage [XAO:1000094] <68>(436|583) (436|330|141)
0:   NF stage 62 [XAO:1000074](5|6) (5|3|1)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Fibrinogen coiled-coil and central regions0Direct
gamma-Crystallin-like0.00003096Direct
Cytochrome P4500.0001098Direct
FAD-linked reductases, C-terminal domain0.000128Direct
Serpins0.0004549Direct


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Family

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SCOP termFDR (all)Annotation (direct or inherited)
Fibrinogen coiled-coil and central regions0Direct
Crystallins/Ca-binding development proteins0.00002156Direct
Cytochrome P4500.00005539Direct
FAD-linked reductases, N-terminal domain0.00008746Direct
Serpins0.0003205Direct
L-aminoacid/polyamine oxidase0.0003603Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Fibrinogen coiled-coil and central regions0Direct
gamma-Crystallin-like0.00002056Direct
Cytochrome P4500.00007325Direct
FAD-linked reductases, C-terminal domain0.00008556Direct
Serpins0.000307Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
51905,54373
  • 51905 - FAD/NAD(P)-binding domain
  • 54373 - FAD-linked reductases, C-terminal domain
  • 0.0003621Direct
    57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.0006525Direct
    52440,56059
  • 52440 - PreATP-grasp domain
  • 56059 - Glutathione synthetase ATP-binding domain-like
  • 0.0006525Direct

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57850,57850,57850
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 57850 - RING/U-box
  • 0.0001894Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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