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Xenopus DEvelopment stage (XDE): NF stage 66

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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + + 4:   post-embryonic stage [XAO:1000095] <3>(124|170) (125|89|39)
+ + + 3:   tadpole stage [XAO:1000008] <2>(117|162) (118|85|36)
+ + 2:   Xenopus developmental stage [XAO:1000000] <6>
+ + 2:   metamorphosing tadpole stage [XAO:1000079] <2>(98|139) (99|75|32)
+ 1:   climax stage [XAO:1000091] <9>(80|119) (81|65|29)
+ 1:   NF stage [XAO:1000094] <68>(432|574) (432|325|138)
0:   NF stage 66 [XAO:1000078](19|27) (19|13|11)


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain0Direct
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains0Direct
Aconitase iron-sulfur domain0Direct
LeuD/IlvD-like0Direct
ACP-like0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
TB module/8-cys domain0Direct
Proteasome activator0Direct
PLP-binding barrel0Direct
Alanine racemase C-terminal domain-like0Direct
F1F0 ATP synthase subunit C0Direct
LDH C-terminal domain-like0Direct
UBC-like0.00009Direct
Actin depolymerizing proteins0.0003597Direct
Thioredoxin-like0.0005887Direct
Spectrin repeat0.0006318Direct
RNA-binding domain, RBD0.0007218Direct
Translation proteins SH3-like domain0.0009339Direct
NagB/RpiA/CoA transferase-like0.0009339Direct


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
LDH N-terminal domain-like0Direct
Alanine racemase-like, N-terminal domain0Direct
GABARAP-like0Direct
Proteasome activator0Direct
ENTH domain0Direct
Malic enzyme N-domain0Direct
Phenylalanine metabolism regulatory domain0Direct
Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain0Direct
Lactate & malate dehydrogenases, C-terminal domain0Direct
UDP-glucose pyrophosphorylase0Direct
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains0Direct
Chromo barrel domain0Direct
NagB-like0Direct
SH3BGR (SH3-binding, glutamic acid-rich protein-like)0Direct
Alpha-adaptin ear subdomain-like0Direct
Clathrin adaptor appendage, alpha and beta chain-specific domain0Direct
Eukaryotic ODC-like0Direct
Group II chaperonin (CCT, TRIC), intermediate domain0Direct
TB module/8-cys domain0Direct
F1F0 ATP synthase subunit C0Direct
Aconitase iron-sulfur domain0Direct
LeuD-like0Direct
Proteasome subunits0.0000006529Direct
UBC-related0.00004282Direct
Canonical RBD0.00005375Direct
Cofilin-like0.0001244Direct
Group II chaperonin (CCT, TRIC), apical domain0.0009997Direct


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Vasodilator-stimulated phosphoprotein, VASP, tetramerisation domain0Direct
F1F0 ATP synthase subunit C0Direct
Aromatic aminoacid monoxygenases, catalytic and oligomerization domains0Direct
Subunits of heterodimeric actin filament capping protein Capz0Direct
LDH C-terminal domain-like0Direct
Proteasome activator0Direct
LeuD/IlvD-like0Direct
ACP-like0Direct
Alanine racemase C-terminal domain-like0Direct
Aconitase iron-sulfur domain0Direct
PLP-binding barrel0Direct
TB module/8-cys domain0Direct
UBC-like0.00005995Direct
Actin depolymerizing proteins0.0002426Direct
Thioredoxin-like0.0004Direct
Spectrin repeat0.0004302Direct
RNA-binding domain, RBD0.0004922Direct
NagB/RpiA/CoA transferase-like0.0006387Direct
Translation proteins SH3-like domain0.0006387Direct

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
55021,56534
  • 55021 - ACT-like
  • 56534 - Aromatic aminoacid monoxygenases, catalytic and oligomerization domains
  • 0Direct
    53732,52016
  • 53732 - Aconitase iron-sulfur domain
  • 52016 - LeuD/IlvD-like
  • 0Direct
    57184,57581
  • 57184 - Growth factor receptor domain
  • 57581 - TB module/8-cys domain
  • 0Direct
    47095,47095
  • 47095 - HMG-box
  • 47095 - HMG-box
  • 0Direct
    51735,56327
  • 51735 - NAD(P)-binding Rossmann-fold domains
  • 56327 - LDH C-terminal domain-like
  • 0Direct
    51419,50621
  • 51419 - PLP-binding barrel
  • 50621 - Alanine racemase C-terminal domain-like
  • 0Direct
    54160,57850
  • 54160 - Chromo domain-like
  • 57850 - RING/U-box
  • 0Direct
    57196,57581
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 0Direct
    53300,49899
  • 53300 - vWA-like
  • 49899 - Concanavalin A-like lectins/glucanases
  • 0Direct
    57581,57196
  • 57581 - TB module/8-cys domain
  • 57196 - EGF/Laminin
  • 0Direct
    57581,57184
  • 57581 - TB module/8-cys domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    46966,47473
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0Direct
    46966,46966
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 0.0007344Direct

    (show details)
    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    54160,57850,57845
  • 54160 - Chromo domain-like
  • 57850 - RING/U-box
  • 57845 - B-box zinc-binding domain
  • 0Direct
    57581,57196,57581
  • 57581 - TB module/8-cys domain
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 0Direct
    47220,47220,47220
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 47220 - alpha-catenin/vinculin-like
  • 0Direct
    57196,57196,57581
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 0Direct
    57196,57184,57184
  • 57196 - EGF/Laminin
  • 57184 - Growth factor receptor domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    57196,57581,57184
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 57184 - Growth factor receptor domain
  • 0Direct
    57581,57196,57196
  • 57581 - TB module/8-cys domain
  • 57196 - EGF/Laminin
  • 57196 - EGF/Laminin
  • 0Direct
    46966,46966,47473
  • 46966 - Spectrin repeat
  • 46966 - Spectrin repeat
  • 47473 - EF-hand
  • 0Direct
    57184,57581,57196
  • 57184 - Growth factor receptor domain
  • 57581 - TB module/8-cys domain
  • 57196 - EGF/Laminin
  • 0Direct
    57196,57581,57196
  • 57196 - EGF/Laminin
  • 57581 - TB module/8-cys domain
  • 57196 - EGF/Laminin
  • 0Direct
    57581,57184,57581
  • 57581 - TB module/8-cys domain
  • 57184 - Growth factor receptor domain
  • 57581 - TB module/8-cys domain
  • 0Direct


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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