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Xenopus DEvelopment stage (XDE): late tailbud stage

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Root: XA Hierarchy (Xenopus anatomy and development from Xenbase frog anatomy ontology)

Shortest distance to current term (+ for parents, - for children) XA term [XA ID] <#Children> (#SF|#FA) #Supra-domain
(Single|Duplex|Triple)
+ + + 3:   Xenopus developmental stage [XAO:1000000] <6>
+ + 2:   embryonic stage [XAO:1000012] <6>(40|57) (41|42|16)
+ 1:   tailbud stage [XAO:1000007] <2>(18|16) (18|14|5)
0:   late tailbud stage [XAO:1000080] <12>(14|14) (14|10|3)
- 1:   NF stage 29 and 30 [XAO:1000045](2|2) (2|2|0)
- 1:   NF stage 31 [XAO:1000046](0|0) (0|1|0)
- 1:   NF stage 32 [XAO:1000047](0|1) (0|0|0)
- 1:   NF stage 33 and 34 [XAO:1000048](0|0) (0|0|0)
- 1:   NF stage 35 and 36 [XAO:1000049](6|5) (6|2|1)
- 1:   NF stage 37 and 38 [XAO:1000050](2|3) (2|0|0)
- 1:   NF stage 39 [XAO:1000051](0|0) (0|0|0)
- 1:   NF stage 40 [XAO:1000052](3|3) (3|1|0)
- 1:   NF stage 41 [XAO:1000053](0|1) (0|1|0)
- 1:   NF stage 42 [XAO:1000054](1|1) (1|0|0)
- 1:   NF stage 43 [XAO:1000055](1|0) (1|0|0)
- 1:   NF stage 44 [XAO:1000056](1|1) (1|0|0)


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Superfamily

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SCOP termFDR (all)Annotation (direct or inherited)
Cation efflux protein cytoplasmic domain-like0Direct
MAST3 pre-PK domain-like0Direct
beta-beta-alpha zinc fingers0.03394Inherited
Periplasmic binding protein-like I0.04111Inherited
Homeodomain-like0.1027Inherited
PLC-like phosphodiesterases0.1064Inherited
E set domains0.2929Inherited
Nuclear receptor ligand-binding domain0.3604Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.3743Inherited
Nicotinic receptor ligand binding domain-like0.3743Inherited
Periplasmic binding protein-like II0.5381Inherited
Cytokine0.589Inherited
SpoIIaa-like0.589Inherited
EGF/Laminin0.8749Inherited


Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Family

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SCOP termFDR (all)Annotation (direct or inherited)
MAST3 pre-PK domain-like0Direct
THAP domain0.005282Inherited
L-arabinose binding protein-like0.03532Inherited
Homeodomain0.06457Inherited
Mammalian PLC0.116Inherited
PLC-like (P variant)0.1705Inherited
Nuclear receptor ligand-binding domain0.2943Inherited
Nicotinic receptor ligand binding domain-like0.3177Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.3177Inherited
Forkhead DNA-binding domain0.3482Inherited
Fibroblast growth factors (FGF)0.5289Inherited
Phosphate binding protein-like0.5864Inherited
Cadherin0.6406Inherited
Pleckstrin-homology domain (PH domain)0.6515Inherited


Plot distribution on phylogenetic tree for Superfamily and/or Family domains annotated by this phenotype term
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Jump to [ Top · Phenotype Hierarchy · Superfamily · Family · Supra-domain ]

Supra-domain (including individual superfamily)

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Supra-domain (Single) FDR (all) Annotation (direct or inherited)
Cation efflux protein cytoplasmic domain-like0Direct
MAST3 pre-PK domain-like0Direct
beta-beta-alpha zinc fingers0.02547Inherited
Periplasmic binding protein-like I0.03123Inherited
Homeodomain-like0.08328Inherited
PLC-like phosphodiesterases0.08657Inherited
E set domains0.2568Inherited
Nuclear receptor ligand-binding domain0.3171Inherited
Neurotransmitter-gated ion-channel transmembrane pore0.3303Inherited
Nicotinic receptor ligand binding domain-like0.3303Inherited
Periplasmic binding protein-like II0.4901Inherited
SpoIIaa-like0.5408Inherited
Cytokine0.5408Inherited
EGF/Laminin0.8426Inherited

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Supra-domain (Duplex) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
48371,101447
  • 48371 - ARM repeat
  • 101447 - Formin homology 2 domain (FH2 domain)
  • 0Direct
    50044,50156
  • 50044 - SH3-domain
  • 50156 - PDZ domain-like
  • 0Direct
    46689,57667
  • 46689 - Homeodomain-like
  • 57667 - beta-beta-alpha zinc fingers
  • 0Direct
    161111,160240
  • 161111 - Cation efflux protein transmembrane domain-like
  • 160240 - Cation efflux protein cytoplasmic domain-like
  • 0Direct
    52058,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    50729,47473
  • 50729 - PH domain-like
  • 47473 - EF-hand
  • 0.1232Inherited
    51695,49562
  • 51695 - PLC-like phosphodiesterases
  • 49562 - C2 domain (Calcium/lipid-binding domain, CaLB)
  • 0.1232Inherited
    55550,56112
  • 55550 - SH2 domain
  • 56112 - Protein kinase-like (PK-like)
  • 0.1449Inherited
    63712,90112
  • 63712 - Nicotinic receptor ligand binding domain-like
  • 90112 - Neurotransmitter-gated ion-channel transmembrane pore
  • 0.3303Inherited
    49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.6956Inherited

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    Supra-domain (Triple) in N- to C-terminal order FDR (all) Annotation (direct or inherited)
    57184,52058,49265
  • 57184 - Growth factor receptor domain
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 0Direct
    52058,49265,49265
  • 52058 - L domain-like
  • 49265 - Fibronectin type III
  • 49265 - Fibronectin type III
  • 0Direct
    49313,49313,49313
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 49313 - Cadherin-like
  • 0.4601Inherited


    Plot distribution on phylogenetic tree for Supra-domains (Single/Individual) annotated by this phenotype term
    Plot tree as:   Download Newick format tree:
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